BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4231.p (359 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H... 549 e-158 gi|134093972|ref|YP_001099047.1| UDP-glucose 4-epimerase [Hermin... 89 3e-19 gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimeras... 83 3e-17 gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydr... 57 2e-09 >gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [Herminiimonas arsenicoxydans] Length = 367 Score = 549 bits (1414), Expect = e-158, Method: Compositional matrix adjust. Identities = 260/360 (72%), Positives = 292/360 (81%), Gaps = 2/360 (0%) Query: 1 MIFVTGGAGFIGSNFILDWLRDAQAEAVLNIDKLTYAGNPYNLSSVADDARYAFVQADIC 60 MI VTGGAGFIGSNF+LDWL + E V+N+DKLTYAGNP NL+S+ DD R+ FV ADIC Sbjct: 1 MILVTGGAGFIGSNFVLDWLAQSD-EPVVNVDKLTYAGNPNNLASLRDDTRHIFVHADIC 59 Query: 61 DESAMATLLARYRPRAILHFAAESHVDRSILNPDEFIRTNVNGTFNLLNKALRYWQALPA 120 D M LL+ Y+P AI+HFAAESHVDRSI P EF+RTN+NGTF+LL A YW L + Sbjct: 60 DSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQLTS 119 Query: 121 QEQADFRFLHVSTDEVYGSLEPDDAPFCETTPYAPNSPYSASKAASDHLVRAYHHTYGLP 180 E+ FRFLHVSTDEVYG+L PDDAPF ETT YAPNSPYSASKAASDHLVR+YHHTYGLP Sbjct: 120 AEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTYGLP 179 Query: 181 TLTTNCSNNYGPYHFPEKLIPLVISNALAGNPLPIYGDGQQIRDWLYVTDHCAAIRTVLA 240 TLTTNCSNNYGPYHFPEKLIPL+I+NALAG PLPIYGDGQQIRDWLYV DHC AIR VL Sbjct: 180 TLTTNCSNNYGPYHFPEKLIPLIIANALAGKPLPIYGDGQQIRDWLYVGDHCTAIRRVLQ 239 Query: 241 RGRVGQTYNIGGWNEQTNLHVVHTLCDTLDQLQPRSQG-SYRELITFVKDRPGHDRRYAI 299 G+ G+TYNIGGWNE+ NL VV+TLCD LD LQP G SYR+ IT+V DRPGHDRRYAI Sbjct: 240 AGKPGETYNIGGWNEKANLDVVNTLCDMLDALQPNGAGSSYRKQITYVADRPGHDRRYAI 299 Query: 300 DARKLERELGWKPGETFQSGIHKTVQWYLANGEWVAQVRSGAYLNWLQQQYGDHPAGTSI 359 DARK+ERELGWKP ETF SGI KTVQWYL N WV V+SG Y+ WL++ Y A + + Sbjct: 300 DARKIERELGWKPAETFDSGIRKTVQWYLENQAWVRDVQSGDYMKWLEKNYQQRNAASEL 359 >gi|134093972|ref|YP_001099047.1| UDP-glucose 4-epimerase [Herminiimonas arsenicoxydans] Length = 339 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 141/349 (40%), Gaps = 47/349 (13%) Query: 2 IFVTGGAGFIGSNFILDWLRDAQAEAVLNIDKLTYAGNPYNLSSVA--DDARYAFVQADI 59 I VTGGAG+IGS+ ++ + V+ +D L + L VA A F+QAD+ Sbjct: 3 ILVTGGAGYIGSHTCVELIN--AGYQVVVVDNLCNSKASV-LERVAGITGATIPFIQADL 59 Query: 60 CDESAMATLLARYRPRAILHFAAESHVDRSILNPDEFIRTNVNGTFNLLNKALRYWQALP 119 +A+ + +Y A++HFA V S+ P + NV G+ LL Q + Sbjct: 60 RHRNAIEKIFTQYNFDAVMHFAGLKAVGESVTEPLRYYDNNVEGSLVLL-------QVMA 112 Query: 120 AQEQADFRFLHVSTDEVYGSLEPDDAPFCETTPYAPNSPYSASKAASDHLVRAYHHT--- 176 + F S+ VYG +P P E P A +PY SK + ++R H+ Sbjct: 113 KHDVTKLVF--SSSATVYG--DPATVPILEDFPLAATNPYGRSKLMIEEMLRDLAHSDPA 168 Query: 177 ---YGLPTLTTNCSNNYG-----PYHFPEKLIPLVISNALA-GNPLPIYG------DGQQ 221 L ++ G P P L P V A + L +YG DG Sbjct: 169 WRIALLRYFNPAGAHESGLIGEDPNDIPNNLFPYVAQVASGRRDLLSVYGDDYPTDDGTG 228 Query: 222 IRDWLYVTD----HCAAIRTVLARGRVGQTYNIGGWNEQTNLHVVHTLCDTLDQLQPRSQ 277 +RD+++V D H + +LA Q YN+G + L ++ R+ Sbjct: 229 VRDYIHVVDLAIGHVKTLEKLLASAAGVQAYNLGTGCGSSVLQMIQAF--------ERAS 280 Query: 278 GSYRELITFVKDRPGHDRRYAIDARKLERELGWKPGETFQSGIHKTVQW 326 G R V RPG DA +RELGW+ + + T +W Sbjct: 281 GR-RVPYRVVARRPGDIAVCYADASLAQRELGWRAERSIEQMCVDTWRW 328 >gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimerase [Herminiimonas arsenicoxydans] Length = 309 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 36/324 (11%) Query: 7 GAGFIGSNFILDWLRDAQAEAVLNIDKLTYAGNPYNLSSVADDARYAFVQADICDESAMA 66 GAGFIG +FI + E N+ L + P D R +VQ ++ E A+ Sbjct: 8 GAGFIGQSFI-----EFALEHGYNLRVLDHKSCPAEF-----DGRLTWVQGNLSSEEAVR 57 Query: 67 TLLARYRPRAILHFAAESHVDRSILNPDEFIRTNVNGTFNLLNKALRYWQALPAQEQADF 126 +L + + HF + S V + + + NV T +LL L QE+ Sbjct: 58 KVLQK--SDIVFHFIS-STVPGDVADEGGELIQNVVETLHLLKLCL--------QEKVS- 105 Query: 127 RFLHVSTDEVYGSLEPDDAPFCETTPYAPNSPYSASKAASDHLVRAYHHTYGLPTLTTNC 186 R + +S+ VYG ++P P ET P S + K + + ++ Y + YGL Sbjct: 106 RVVFISSASVYG-VQPV-LPIAETALTDPISSHGIHKLSIEKYLQLYKYQYGLDCKIMRL 163 Query: 187 SNNYGPYHFP---EKLIPLVISNALAGNPLPIYGDGQQIRDWLYVTDHCAAIRTVLARGR 243 SN YGP + + + + LAG+ + I GDG IRD++Y+ D C+A+ + Sbjct: 164 SNPYGPRQSIKGRQGFVAIALGKILAGDAISIRGDGSAIRDFIYIADVCSALHLLAITKV 223 Query: 244 VGQTYNIGGWNEQTNLHVVHTLCDTLDQLQPRSQGSYRELITFVKDRPGHDRRYAIDARK 303 +N+G + VV + +Q R + ++V R +D + Sbjct: 224 KDSVFNVGSGQGYSLNQVVEGMEKITEQ---------RLVTSYVASRFVDIPASVLDVSR 274 Query: 304 LERELGWKPGETFQSGIHKTVQWY 327 +LG + + G+ +T ++ Sbjct: 275 AREQLGHVIKYSLEQGLAETFAFH 298 >gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydratase [Herminiimonas arsenicoxydans] Length = 307 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 31/289 (10%) Query: 55 VQADICDESAMATLLARYRPRAILHFAAESHVDRSILNPDEFIRTNVNGTFNLLNKALRY 114 ++ +ICD++A+ + +P + H AA+S V RS NP E +TNV GT ++L +ALR Sbjct: 4 LRVNICDQAALEEAILAVQPDFVFHLAAQSLVRRSYDNPIETWQTNVMGTLHVL-EALR- 61 Query: 115 WQALPAQEQADFRFLHVSTDEVYGSLEPDDAPFCETTPYAPNSPYSASKAASDHLVRAYH 174 + + +++D+ Y ++E + ET PYSASK A++ +R++ Sbjct: 62 ------KLDKSCAAVIITSDKCYDNVEWVWG-YRETDAMGGPDPYSASKGAAELAIRSHI 114 Query: 175 HTYGLPTLTTN-------CSNNYGPYHFPEKLIPLVISNALAGNPLPIYGDGQQIRDWLY 227 +Y P T+ N G + + I A A N + R W + Sbjct: 115 KSY-FPKATSKVRIAAARAGNVIGGGDWADDRIVPDCVKAWANNDDVELRNPHSTRPWQH 173 Query: 228 VTDHCAAIRTVLA----RGRV-GQTYNIGGWNEQTN--LHVVHTLCDTLDQLQPRSQGSY 280 V + + ++ A R + G+ +N G +Q + L +V+ + DQ++ + Sbjct: 174 VLEPLSGYLSLAAALSQRPELHGEPFNFGPPAQQNHSVLELVNQMALYWDQVRWKD---- 229 Query: 281 RELITFVKDRPGHDRRYAIDARKLERELGWKPGETFQSGIHKTVQWYLA 329 ++ P ++ K L W+ F+ + T +WY A Sbjct: 230 ---VSQSAIGPYESGLLKLNCDKALHHLHWRAVMGFEDTVRMTAEWYRA 275 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 757,509 Number of extensions: 31733 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 4 Length of query: 359 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 276 Effective length of database: 726,862 Effective search space: 200613912 Effective search space used: 200613912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)