BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4230.p (336 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093972|ref|YP_001099047.1| UDP-glucose 4-epimerase [Hermin... 438 e-124 gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimeras... 95 5e-21 gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H... 91 6e-20 >gi|134093972|ref|YP_001099047.1| UDP-glucose 4-epimerase [Herminiimonas arsenicoxydans] Length = 339 Score = 438 bits (1127), Expect = e-124, Method: Compositional matrix adjust. Identities = 203/336 (60%), Positives = 260/336 (77%), Gaps = 2/336 (0%) Query: 1 MNILVTGGAGYIGSHTCVELLNAGHEVIVFDNFCNSSPESVKRVQQITGRSLSLVKGDIR 60 M ILVTGGAGYIGSHTCVEL+NAG++V+V DN CNS ++RV ITG ++ ++ D+R Sbjct: 1 MKILVTGGAGYIGSHTCVELINAGYQVVVVDNLCNSKASVLERVAGITGATIPFIQADLR 60 Query: 61 NRDQLESVLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEAMEAAGVKTFV 120 +R+ +E + ++ +AV+HFAGLKAVGESV +PL+YYDNNV G++ LL+ M V V Sbjct: 61 HRNAIEKIFTQYNFDAVMHFAGLKAVGESVTEPLRYYDNNVEGSLVLLQVMAKHDVTKLV 120 Query: 121 FSSSATVYGDPQYLPLTESHPLSASNPYGRSKIIIEDMLRDYYRAHPDWKIALLRYFNPV 180 FSSSATVYGDP +P+ E PL+A+NPYGRSK++IE+MLRD + P W+IALLRYFNP Sbjct: 121 FSSSATVYGDPATVPILEDFPLAATNPYGRSKLMIEEMLRDLAHSDPAWRIALLRYFNPA 180 Query: 181 GAHESGLIGEDPSGIPNNLMPYVAQVAVGRRERLSIWGGDYATPDGTGVRDFIHVVDLAI 240 GAHESGLIGEDP+ IPNNL PYVAQVA GRR+ LS++G DY T DGTGVRD+IHVVDLAI Sbjct: 181 GAHESGLIGEDPNDIPNNLFPYVAQVASGRRDLLSVYGDDYPTDDGTGVRDYIHVVDLAI 240 Query: 241 GHVAALQAL--TAPECFAVNLGTGIGYSVLDVVKAYEKAAGKAIPYTIAARRPGDIASCY 298 GHV L+ L +A A NLGTG G SVL +++A+E+A+G+ +PY + ARRPGDIA CY Sbjct: 241 GHVKTLEKLLASAAGVQAYNLGTGCGSSVLQMIQAFERASGRRVPYRVVARRPGDIAVCY 300 Query: 299 ADPAEARRKLGWEAKRGLDAMCADSWRWQQNNPNGF 334 AD + A+R+LGW A+R ++ MC D+WRWQ + F Sbjct: 301 ADASLAQRELGWRAERSIEQMCVDTWRWQSMSEERF 336 >gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimerase [Herminiimonas arsenicoxydans] Length = 309 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 152/323 (47%), Gaps = 35/323 (10%) Query: 8 GAGYIGSHTCVELLNAGHEVIVFDNFCNSSPESVKRVQQITGRSLSLVKGDIRNRDQLES 67 GAG+IG L G+ + V D+ S P + GR L+ V+G++ + + + Sbjct: 8 GAGFIGQSFIEFALEHGYNLRVLDH--KSCPA------EFDGR-LTWVQGNLSSEEAVRK 58 Query: 68 VLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEAMEAAGVKTFVFSSSATV 127 VL+ K + V HF G+ ++ + NVV T+ LL+ V VF SSA+V Sbjct: 59 VLQ--KSDIVFHFISSTVPGDVADEGGELI-QNVVETLHLLKLCLQEKVSRVVFISSASV 115 Query: 128 YGDPQYLPLTESHPLSASNPYGRSKIIIEDMLRDY-YRAHPDWKIALLRYFNPVGAHESG 186 YG LP+ E+ + +G K+ IE L+ Y Y+ D KI +R NP G +S Sbjct: 116 YGVQPVLPIAETALTDPISSHGIHKLSIEKYLQLYKYQYGLDCKI--MRLSNPYGPRQS- 172 Query: 187 LIGEDPSGIPNNLMPYVAQVAVGRRERLSIWGGDYATP--DGTGVRDFIHVVDLAIGHVA 244 +VA +A+G+ I GD + DG+ +RDFI++ D+ Sbjct: 173 ---------IKGRQGFVA-IALGK-----ILAGDAISIRGDGSAIRDFIYIADVC--SAL 215 Query: 245 ALQALTAPECFAVNLGTGIGYSVLDVVKAYEKAAGKAIPYTIAARRPGDIASCYADPAEA 304 L A+T + N+G+G GYS+ VV+ EK + + + A R DI + D + A Sbjct: 216 HLLAITKVKDSVFNVGSGQGYSLNQVVEGMEKITEQRLVTSYVASRFVDIPASVLDVSRA 275 Query: 305 RRKLGWEAKRGLDAMCADSWRWQ 327 R +LG K L+ A+++ + Sbjct: 276 REQLGHVIKYSLEQGLAETFAFH 298 >gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [Herminiimonas arsenicoxydans] Length = 367 Score = 91.3 bits (225), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 154/351 (43%), Gaps = 45/351 (12%) Query: 3 ILVTGGAGYIGSHTCVELLNAGHEVIV-FDNFCNS-SPESVKRVQQITGRSLSLVKGDIR 60 ILVTGGAG+IGS+ ++ L E +V D + +P ++ ++ T R + V DI Sbjct: 2 ILVTGGAGFIGSNFVLDWLAQSDEPVVNVDKLTYAGNPNNLASLRDDT-RHI-FVHADIC 59 Query: 61 NRDQLESVLREFKCEAVIHFAGLKAVGESVEQPLKYYDNNVVGTVRLLEA-------MEA 113 + D+++ +L +K A++HFA V S+ P ++ N+ GT LLEA + + Sbjct: 60 DSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQLTS 119 Query: 114 AGVKTFVF--SSSATVYGD--PQYLPLTESHPLSASNPYGRSKIIIEDMLRDYYRAHPDW 169 A + F F S+ VYG P P +E+ + ++PY SK + ++R Y+ + Sbjct: 120 AEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTYG-- 177 Query: 170 KIALLRYFNPVGAHESGLIGEDPSGIPNNLMPYVAQVAVGRRERLSIWGGDYATPDGTGV 229 L ++ G P P L+P + A+ + L I+G DG + Sbjct: 178 ----LPTLTTNCSNNYG-----PYHFPEKLIPLIIANALAGKP-LPIYG------DGQQI 221 Query: 230 RDFIHVVDLAIGHVAALQALTAPECFAVNLGTGIGYSVLDVVKAY--------EKAAGKA 281 RD+++V D LQA E + N+G + LDVV AG + Sbjct: 222 RDWLYVGDHCTAIRRVLQAGKPGETY--NIGGWNEKANLDVVNTLCDMLDALQPNGAGSS 279 Query: 282 I--PYTIAARRPGDIASCYADPAEARRKLGWEAKRGLDAMCADSWRWQQNN 330 T A RPG D + R+LGW+ D+ + +W N Sbjct: 280 YRKQITYVADRPGHDRRYAIDARKIERELGWKPAETFDSGIRKTVQWYLEN 330 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 695,606 Number of extensions: 29957 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 5 Length of query: 336 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 254 Effective length of database: 730,157 Effective search space: 185459878 Effective search space used: 185459878 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)