BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4229.p
         (371 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydr...   248   5e-67
gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H...    57   1e-09

>gi|134094365|ref|YP_001099440.1| putative CDP-glucose
           4,6-dehydratase [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  248 bits (632), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 134/296 (45%), Positives = 183/296 (61%), Gaps = 6/296 (2%)

Query: 76  DVRDPLHLAHSMAAAQADVVFHLAAQALVRDSYLTPVDTYATNVMGTVHVLEAVRQTPSV 135
           ++ D   L  ++ A Q D VFHLAAQ+LVR SY  P++T+ TNVMGT+HVLEA+R+    
Sbjct: 7   NICDQAALEEAILAVQPDFVFHLAAQSLVRRSYDNPIETWQTNVMGTLHVLEALRKLDKS 66

Query: 136 RSVVVVTSDKCYENREWLWGYREDEPMGGHDPYSSSKGVAELVTAAYRRSFFGKAGNEQV 195
            + V++TSDKCY+N EW+WGYRE + MGG DPYS+SKG AEL   ++ +S+F KA   +V
Sbjct: 67  CAAVIITSDKCYDNVEWVWGYRETDAMGGPDPYSASKGAAELAIRSHIKSYFPKA-TSKV 125

Query: 196 GIASVRAGNVIGGGDFAADRLIPDFIRALEKDAPVSIRNPTAVRPWQFVLEPLSGYLQIA 255
            IA+ RAGNVIGGGD+A DR++PD ++A   +  V +RNP + RPWQ VLEPLSGYL +A
Sbjct: 126 RIAAARAGNVIGGGDWADDRIVPDCVKAWANNDDVELRNPHSTRPWQHVLEPLSGYLSLA 185

Query: 256 QLLYEHGSQYAEGWNFGPAETDPKTVGQLCTTFNQALQQHQVAPARVVLEPQANAPHEAH 315
             L +    + E +NFGP      +V +L      AL   QV    V     A  P+E+ 
Sbjct: 186 AALSQRPELHGEPFNFGPPAQQNHSVLELVNQM--ALYWDQVRWKDV--SQSAIGPYESG 241

Query: 316 LLRLDISKARQRLGWEPRMELSAALELTAQWYAGYLNNE-DLRALSEEQIHFYQSL 370
           LL+L+  KA   L W   M     + +TA+WY  Y      + A++ EQ+  Y  L
Sbjct: 242 LLKLNCDKALHHLHWRAVMGFEDTVRMTAEWYRAYYQQPMQIAAVTGEQLDAYTKL 297


>gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase
           [Herminiimonas arsenicoxydans]
          Length = 367

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 134/343 (39%), Gaps = 35/343 (10%)

Query: 23  VFITGHTGFKGGWLSL-WLHMMGARVSGYS-LPAPTNPSLFHLARL-----HNCLHTTTG 75
           + +TG  GF G    L WL      V     L    NP+  +LA L     H  +H    
Sbjct: 2   ILVTGGAGFIGSNFVLDWLAQSDEPVVNVDKLTYAGNPN--NLASLRDDTRHIFVH---A 56

Query: 76  DVRDPLHLAHSMAAAQADVVFHLAAQALVRDSYLTPVDTYATNVMGTVHVLEAVRQT-PS 134
           D+ D   +   ++  +   + H AA++ V  S   P +   TN+ GT  +LEA R   P 
Sbjct: 57  DICDSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQ 116

Query: 135 VRSVVVVTSDKCYENREWLWG--------YREDEPMGGHDPYSSSKGVAELVTAAYRRSF 186
           + S         + + + ++G        + E      + PYS+SK  ++ +  +Y  ++
Sbjct: 117 LTSAEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTY 176

Query: 187 FGKAGNEQVGIASVRAGNVIGGGDFAADRLIPDFIRALEKDAPVSIR-NPTAVRPWQFVL 245
                   +   +    N  G   F  ++LIP  I       P+ I  +   +R W +V 
Sbjct: 177 -------GLPTLTTNCSNNYGPYHFP-EKLIPLIIANALAGKPLPIYGDGQQIRDWLYVG 228

Query: 246 EPLSGYLQIAQLLYEHGSQYAEGWNFGPAETDPKTVGQLCTTFNQALQQHQVAPA-RVVL 304
           +  +   ++ Q      +    GWN    + +   V  LC   + ALQ +    + R  +
Sbjct: 229 DHCTAIRRVLQAGKPGETYNIGGWN---EKANLDVVNTLCDMLD-ALQPNGAGSSYRKQI 284

Query: 305 EPQANAPHEAHLLRLDISKARQRLGWEPRMELSAALELTAQWY 347
              A+ P       +D  K  + LGW+P     + +  T QWY
Sbjct: 285 TYVADRPGHDRRYAIDARKIERELGWKPAETFDSGIRKTVQWY 327


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 737,499
Number of extensions: 29846
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 288
Effective length of database: 726,862
Effective search space: 209336256
Effective search space used: 209336256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)