BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4228.p
         (114 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096559|ref|YP_001101634.1| hypothetical protein HEAR3412 [...   150   2e-38

>gi|134096559|ref|YP_001101634.1| hypothetical protein HEAR3412
           [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  150 bits (378), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 90/112 (80%)

Query: 1   MLRIILMQLVTTVVAALVAGMLGGVSALWSALLGGVCCVVPNALFALRLHVSAQKPGGTN 60
           ML ++L+Q  TTV+A+++AG++ G+ AL+SALLGG+CCVVPN LFALRL  +AQK    N
Sbjct: 1   MLPVVLLQFATTVIASIIAGLIAGMPALYSALLGGLCCVVPNGLFALRLFSAAQKSESVN 60

Query: 61  PMTFFFGEFIKIATTFALMGAIVWLYHGVHWLAFVLSFIVVLKSYFILLFRH 112
           PMTFF GEFIKIA T AL+GA+VWLY  ++ LA V +FIV LKSY ILLFRH
Sbjct: 61  PMTFFIGEFIKIALTMALLGAVVWLYRDLNLLALVAAFIVALKSYIILLFRH 112


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.336    0.145    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 184,605
Number of extensions: 6650
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 44
Effective length of database: 769,697
Effective search space: 33866668
Effective search space used: 33866668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 122 (51.6 bits)