BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4227.p
         (273 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096558|ref|YP_001101633.1| F0F1 ATP synthase subunit A [He...   425   e-120

>gi|134096558|ref|YP_001101633.1| F0F1 ATP synthase subunit A
           [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  425 bits (1092), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/263 (82%), Positives = 242/263 (92%), Gaps = 2/263 (0%)

Query: 13  SEYIVHHLGHFSTHHQTKIVDFSILNVDTIFWSVFCGVVGCLFMFLAARKATSGVPGRFQ 72
           SEYIVHHLGHFST HQ KIVDFSI+N+DTIFWSVF GVVGC FM+LAARKATSGVPGRFQ
Sbjct: 19  SEYIVHHLGHFSTKHQDKIVDFSIINMDTIFWSVFAGVVGCFFMWLAARKATSGVPGRFQ 78

Query: 73  AFVEMVVEMVEDQSKAIVHGDRTFIAPVALTVFVWVALMNSLDFLPVDLASSILGVFGLG 132
           A VEMVVEMV++Q+K+IVHGDR+FIAP+ALTVFVWVALMNSLDFLPVD+ S++    G+ 
Sbjct: 79  AAVEMVVEMVDNQAKSIVHGDRSFIAPLALTVFVWVALMNSLDFLPVDMFSALFQAVGID 138

Query: 133 EM--HHRIVPTADLNGTLGIALGVLALMLYYSVKIKGAGGFIHELFAAPFGIWLAPFNLL 190
            +  +HR VPTADLNGT+GIALGV ALM++Y++KIKGAGGF+ ELFAAPFGIWLAPFNLL
Sbjct: 139 HIIPYHRAVPTADLNGTMGIALGVFALMIFYNIKIKGAGGFVRELFAAPFGIWLAPFNLL 198

Query: 191 LNIIEFAAKTVSLGMRLFGNMYAGELLFLLIALLGSTATAFGFIGHVIAGSIWAIFHILI 250
           LN+IEFAAKTVSL MRLFGNMYAGELLFLLIALLGSTATAFGF GHV+AG++WAIFHILI
Sbjct: 199 LNMIEFAAKTVSLAMRLFGNMYAGELLFLLIALLGSTATAFGFFGHVLAGTLWAIFHILI 258

Query: 251 VLLQAFIFMMLTLVYLGQAHEAH 273
           V LQAFIFMMLTLVY+GQAHE H
Sbjct: 259 VFLQAFIFMMLTLVYIGQAHEGH 281


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.143    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 493,953
Number of extensions: 19272
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 193
Effective length of database: 736,747
Effective search space: 142192171
Effective search space used: 142192171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)