BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4222.p
         (290 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096553|ref|YP_001101628.1| F0F1 ATP synthase subunit gamma...   501   e-143

>gi|134096553|ref|YP_001101628.1| F0F1 ATP synthase subunit gamma
           [Herminiimonas arsenicoxydans]
          Length = 289

 Score =  501 bits (1289), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/289 (83%), Positives = 270/289 (93%)

Query: 1   MATGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQDRMHAARPYSDKIRNIAANLSQAN 60
           MA+GKEIRGKIKSVENTKKITKAMEMVAASKMRKAQ+RMHAARPYSDKIRNIAANLSQAN
Sbjct: 1   MASGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQERMHAARPYSDKIRNIAANLSQAN 60

Query: 61  PEYVHPFMVQQDTAKRVGFIVVTTDKGLCGGMNTNSLRLLTNKFRELEGQGKSIESVAIG 120
           PEY HPF+V+ D +K VGFI+VTTDKGLCGGMNTNSLR++T K RELE QGK +E+VAIG
Sbjct: 61  PEYTHPFLVKSDVSKTVGFIIVTTDKGLCGGMNTNSLRIVTTKLRELEAQGKKVETVAIG 120

Query: 121 NKGLGFLNRIGARVAANVTQLGDTPHLEKLIGPVKVLLDAYQEGKLDAVYLVYTKFINTM 180
           NKGLGFLNRIGARV ++  Q+GDTPHL+KLIGPVKV+LDAYQ+GKLDAVY+VYTKFINTM
Sbjct: 121 NKGLGFLNRIGARVVSHAVQIGDTPHLDKLIGPVKVMLDAYQDGKLDAVYVVYTKFINTM 180

Query: 181 KQEATLQQLLPLTSDKLKADEGAHSWDYIYEPDVQSVVDELLVRYVEALIYQAVAENMAS 240
           KQE  ++QLLPL +D LKAD  + +WDYIYEPD Q+V+DELL+RYVEALI+Q+VAEN+AS
Sbjct: 181 KQEPMMEQLLPLAADALKADADSLAWDYIYEPDAQTVIDELLIRYVEALIFQSVAENLAS 240

Query: 241 EQSARMVAMKAASDNAGSVIGELKLVYNKTRQAAITKELSEIVAGAAAV 289
           EQSARMVAMK+ASDNAGSVIGELKLVYNKTRQAAITKELSEIVAGAAAV
Sbjct: 241 EQSARMVAMKSASDNAGSVIGELKLVYNKTRQAAITKELSEIVAGAAAV 289


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 472,266
Number of extensions: 17584
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 209
Effective length of database: 733,452
Effective search space: 153291468
Effective search space used: 153291468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)