BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4220.p
         (140 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096551|ref|YP_001101626.1| F0F1 ATP synthase subunit epsil...   236   5e-64

>gi|134096551|ref|YP_001101626.1| F0F1 ATP synthase subunit epsilon
           [Herminiimonas arsenicoxydans]
          Length = 140

 Score =  236 bits (601), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/140 (85%), Positives = 131/140 (93%)

Query: 1   MAHTIHVDVVSAEEEIFSGEAEFVALPGEAGELGIYPRHTPLITRIKPGAVRIKIPGQAH 60
           MAHT+ V+VVSAEEEIFSGEAEFVALPGE+GELGI P HTPLITRI+PGAVRIKI GQA 
Sbjct: 1   MAHTMRVEVVSAEEEIFSGEAEFVALPGESGELGILPGHTPLITRIRPGAVRIKIAGQAE 60

Query: 61  EEFVFVAGGLLEVQPDAVTVLADTAIRGADLDEAKAAEAKRLAEEALVNRDSKIDHAAAQ 120
           +EFVFVAGG+LEVQP  VTVLADTAIRGADLDEAKAAEAKRLAEEALVN++SKID+A AQ
Sbjct: 61  DEFVFVAGGILEVQPHGVTVLADTAIRGADLDEAKAAEAKRLAEEALVNKESKIDYAQAQ 120

Query: 121 AELAAAVAQLAAIQKLRQKR 140
           AELA A+AQLAAIQ+LRQKR
Sbjct: 121 AELATAIAQLAAIQRLRQKR 140


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 199,393
Number of extensions: 6725
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 67
Effective length of database: 759,812
Effective search space: 50907404
Effective search space used: 50907404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)