BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4218.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096549|ref|YP_001101624.1| hypothetical protein HEAR3402 [...   331   2e-92

>gi|134096549|ref|YP_001101624.1| hypothetical protein HEAR3402
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  331 bits (849), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 153/247 (61%), Positives = 183/247 (74%)

Query: 22  ATTKPLSSGNKEADRATVQRLAAEIGLQQQMLYAGHKHKVLVVLQGMDTSGKDGTVNDVF 81
           A  KPLSSG+K  D+  +  LA  I   Q +LYA  +HK+L++LQGMDTSGKDG V  VF
Sbjct: 21  AAEKPLSSGDKTQDKLQIDELAEWIAESQDILYAQRRHKLLIILQGMDTSGKDGAVRGVF 80

Query: 82  AAVNPQGIRIANFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDVLITRVHDWID 141
             ++P G+R   FK PT +E  HD+LWRVH QVP  GE+ +FNRSHYEDVLITRVHDWID
Sbjct: 81  GKIDPLGVRSVAFKAPTPVEKDHDFLWRVHQQVPGNGELTIFNRSHYEDVLITRVHDWID 140

Query: 142 DKECKRRYRQINDFERMLWETGTVVLKFFLHISKAEQKARLQSRIDDPNKHWKFDPQDLA 201
           DKEC RRY  I  FE+ML ETGTV+LKFFLHIS  EQK RL+ RI DP+KHWKFDP DL 
Sbjct: 141 DKECARRYEHIRSFEKMLSETGTVILKFFLHISSDEQKKRLEERIADPDKHWKFDPNDLE 200

Query: 202 ERKYWDAYQLRYQEVLRATSTLHAPWYVVPADSKTHRNLLVANVILETLQKLKLKFPDPK 261
           ERKYW+ YQ  Y +++  T   HAPWYV+PADSKTHRNL +A++++ETLQKLKL +P   
Sbjct: 201 ERKYWNDYQRLYAKMIAETDADHAPWYVIPADSKTHRNLAIASIMVETLQKLKLAYPAGN 260

Query: 262 PELKNLK 268
            E   LK
Sbjct: 261 SEYAKLK 267


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 525,232
Number of extensions: 20744
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)