BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4216.p
         (365 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096533|ref|YP_001101608.1| uroporphyrinogen decarboxylase ...   588   e-169

>gi|134096533|ref|YP_001101608.1| uroporphyrinogen decarboxylase
           [Herminiimonas arsenicoxydans]
          Length = 360

 Score =  588 bits (1516), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/358 (78%), Positives = 313/358 (87%)

Query: 8   STFAPLTNDTFLRALLRQPTDYTPLWLMRQAGRYLPEYRATRARAGSFMGLATNPDYATE 67
           + FAPL NDTFLRALLRQPTDYTP+W+MRQAGRYLPEYRATR RAGSF+GLA NPDYATE
Sbjct: 3   TPFAPLKNDTFLRALLRQPTDYTPMWMMRQAGRYLPEYRATRTRAGSFLGLAKNPDYATE 62

Query: 68  VTLQPLERYPLDAAILFSDILTVPDAMGLGLYFADGEGPKFERPLRDEAAVKALQAPDLG 127
           VTLQPL+RY LDAAILFSDILTVPDAMGLGLYF DGEGPKFERPLRDE AV+AL+ P+L 
Sbjct: 63  VTLQPLDRYDLDAAILFSDILTVPDAMGLGLYFVDGEGPKFERPLRDEKAVQALKVPELD 122

Query: 128 KLDYVFKAVTQIRRELHGRVPLIGFSGSPWTLACYMVEGGGSDDFRLVKSMLYGRPDLMH 187
            L YVF AVTQIR EL GRVPLIGFSGSPWTLACYMVEGGGSDDFR VK+MLY RPDLMH
Sbjct: 123 SLQYVFDAVTQIRTELKGRVPLIGFSGSPWTLACYMVEGGGSDDFRTVKAMLYNRPDLMH 182

Query: 188 HILKTNADAVAAYLNAQIAAGAQAVMIFDTWGGALADGIYQQFSLAYMQQVVSHLQRQQD 247
           HIL+TNA  VAAYLNAQI AGAQAVM+FDTWGGALADGIYQQFSL YM++V+ H++ +++
Sbjct: 183 HILQTNAITVAAYLNAQIDAGAQAVMMFDTWGGALADGIYQQFSLHYMREVMKHVKTEKE 242

Query: 248 GQPIPVIVFTKGGGLWLEQIAAIGADAVGLDWTVNLGEARRRVGDKVALQGNLDPNVLFA 307
           G  IP IVFTKGGGLWL +IA +GADAVGLDWTVNLG AR +VGD+VALQGNLDP++LFA
Sbjct: 243 GVRIPSIVFTKGGGLWLNEIADVGADAVGLDWTVNLGAARAQVGDRVALQGNLDPSILFA 302

Query: 308 GDAAIRAEVRKLLESFGRPGAGSGHVFNLGHGISQHTPPDAVATLAQAVHEISREMRA 365
               IR EV K+L SFG+   GSGHVFNLGHGISQ TPP++V+ L  AVHE+SR + A
Sbjct: 303 QPEQIRTEVEKVLMSFGKHAPGSGHVFNLGHGISQFTPPESVSVLVDAVHELSRSLHA 360


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 754,502
Number of extensions: 34066
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 282
Effective length of database: 726,862
Effective search space: 204975084
Effective search space used: 204975084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)