BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4215.p
         (713 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096532|ref|YP_001101607.1| primosomal protein N' [Herminii...   994   0.0  

>gi|134096532|ref|YP_001101607.1| primosomal protein N'
           [Herminiimonas arsenicoxydans]
          Length = 682

 Score =  994 bits (2570), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/717 (69%), Positives = 569/717 (79%), Gaps = 39/717 (5%)

Query: 1   VEQRLLQVALDTPLHTVFDYRWQAATEDEPIPAIGQLVVVPFGRREAVGVVVGHVAQTEL 60
           +E  +L+VALDTPL   FDY W A  E    P  GQLV+VPFGRRE VG++V     +E+
Sbjct: 1   MENCILKVALDTPLDFCFDYVW-AVEESTVRPLAGQLVLVPFGRREVVGLIVAVHETSEV 59

Query: 61  EAGKIKDVIAVRHQLPPLSAHWLALCGFAADYYQRPLGEVMLPGLPKNLRALTTVALDKA 120
              K+K  IAVR QL PLSA W+ALC FAADYYQRPLGEV +PGLPKNLRAL T +LDKA
Sbjct: 60  PLDKLKQAIAVRTQLTPLSAEWIALCTFAADYYQRPLGEVAIPGLPKNLRALKTTSLDKA 119

Query: 121 LKALGRLTAPKKSKARRKTDVHSEVQADAPASIPPPDPLQLGAAPPLNAAQQEAVQAIAG 180
           +K LG+  A           VH               P+   A P LN AQQEA  AIA 
Sbjct: 120 IKKLGKAGA-----------VHDAT------------PI---AMPQLNPAQQEAADAIAS 153

Query: 181 AQGFAPLLLYGVTGSGKTEVYLQAAAAILQRAAQEAGQSQPGQAAPAQILVLVPEINLTP 240
           A GFAP LLYGVTGSGKTEVYLQAAA IL  ++ E          PAQIL+LVPEINLTP
Sbjct: 154 ATGFAPTLLYGVTGSGKTEVYLQAAAQILAHSSDEHN--------PAQILILVPEINLTP 205

Query: 241 QLEGNIRARFPHLNVVALHSGLAEGERARNWLAAHLGQAHIVLGTRLAILASLPTLKLIV 300
           QLE N+RARFP + +  LHSGLAEGER  +WLAAHLGQA I+LGTRLAIL+SLP LKLI+
Sbjct: 206 QLEANVRARFPDVAIATLHSGLAEGERMMHWLAAHLGQARIILGTRLAILSSLPHLKLII 265

Query: 301 IDEEHDPSYKQQEGLRYSARDLAVWRAHQLGIPVVLGSATPSLETWQHAQAGRYRRLELR 360
           +DEEHDPSYKQQEGLRYSARDLAVWRAHQL IP+VLGSATPSLETW HAQ+GRYR+LELR
Sbjct: 266 VDEEHDPSYKQQEGLRYSARDLAVWRAHQLNIPIVLGSATPSLETWHHAQSGRYRKLELR 325

Query: 361 QRAAQQAVLPSVKVIDMERDKP----VDGLTSTLVAAVRKRLEQGEQSLLFLNRRGYAPV 416
           +RA + AVLP V +ID+ER  P     +G+++TL+AA++ R+E+GEQSLLFLNRRGYAPV
Sbjct: 326 ERAVRDAVLPKVGLIDLERKAPREQMTEGVSATLIAALKLRMERGEQSLLFLNRRGYAPV 385

Query: 417 LACDACGWISNCMRCDAFMVVHRPERRLRCHHCSLELQIPRACPTCGNVDLQPLGRGTQR 476
           +ACD+C WISNC RC AF+V+H+ ++RLRCHHC  E +IPR+CPTCGNVDLQPLGRGTQR
Sbjct: 386 IACDSCRWISNCTRCSAFLVLHKLDKRLRCHHCGYEQRIPRSCPTCGNVDLQPLGRGTQR 445

Query: 477 VEEGLQAIFPEARVLRIDADSTRLKGSAQSAFDSVHRGEVDILIGTQMVAKGHDFKKLTL 536
           VEE LQAIFPEAR+LRIDADSTR KGSAQ+AFD+VHRGEVDILIGTQMVAKGHDF+ LTL
Sbjct: 446 VEENLQAIFPEARILRIDADSTRRKGSAQAAFDTVHRGEVDILIGTQMVAKGHDFQNLTL 505

Query: 537 VGVLNPDTALFSHDYRASERLFAQLMQVAGRAGRAGLSADGSSGEVLIQTRYPHHPLYQA 596
           VGV+NPDTALFSHDYRASERLFAQLMQVAGRAGR      GS+ EVLIQTRY  HPLY A
Sbjct: 506 VGVMNPDTALFSHDYRASERLFAQLMQVAGRAGRVAQKEGGSASEVLIQTRYSQHPLYAA 565

Query: 597 VMRHDYDGFAGDLLQERRQAYFPPFMYQALLRAEARELETAMDFLKEAAHLLEAPAITIN 656
           V  HDYD FA +LL+ER+QA FPPFMYQALLRAEA+EL+ A+DFL +A   +E   IT+N
Sbjct: 566 VRTHDYDTFASELLEERQQACFPPFMYQALLRAEAKELKIALDFLHQAIDCVEHGGITMN 625

Query: 657 EPIPMTLVRVANVERAQLLLECPSRPALQGFLKQWLALLRQVKTRVRWSLEVDPVDI 713
           +PIPMT+ RVANV+RAQLL+EC SRPALQ FLK W+A LR++K+RVRWSLEVDPVDI
Sbjct: 626 DPIPMTMTRVANVDRAQLLVECASRPALQAFLKVWIATLREMKSRVRWSLEVDPVDI 682


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,269,473
Number of extensions: 49317
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 625
Effective length of database: 710,387
Effective search space: 443991875
Effective search space used: 443991875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)