BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4214.p
         (577 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093383|ref|YP_001098458.1| arginyl-tRNA synthetase [Hermin...   945   0.0  

>gi|134093383|ref|YP_001098458.1| arginyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 577

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/577 (78%), Positives = 506/577 (87%)

Query: 1   MLAQQKQRISDLFSTALQPLLAGSDLTPTITLERPRDASHGDIACNIAMQLAKPLKKNPR 60
           MLA QKQRI++LF  A+ PL+AG++L PT+TLERPRD SHGD+ACN+AMQ+AKPLKKNPR
Sbjct: 1   MLAAQKQRITELFQAAVAPLVAGTELNPTVTLERPRDPSHGDVACNLAMQIAKPLKKNPR 60

Query: 61  ELAQAIVTAVMADPAREGLVESVEIAGPGFINLRVAAAAKQAVVKVIHEQGEAFGRGTAG 120
           E+AQ +V A++ +PA   L+ES EIAGPGFINLR+  A++Q+VVK + +QG  +G+   G
Sbjct: 61  EVAQVLVAALLDNPANRDLIESAEIAGPGFINLRLTPASRQSVVKTVLQQGAQYGKSNLG 120

Query: 121 AGQKVLVEFVSANPTGPLHVGHGRQGALGDALSSLLEVQGFEVLREFYYNDAGVQIATLA 180
           AG+KV++EFVSANPTGPLHVGHGRQGALGDA+SSL + QG+ V REFYYNDAGVQIATLA
Sbjct: 121 AGKKVIIEFVSANPTGPLHVGHGRQGALGDAMSSLFDAQGYAVTREFYYNDAGVQIATLA 180

Query: 181 TSVQARARGFKPGDAEWPESAYNGDYIADIARDFLDQKTVSASDGEPVTGSGNVEDMESI 240
           TSVQARARG KPG   WPESAYNGDYI DIA DFL +KTVSASDG PVT SG+++D+ESI
Sbjct: 181 TSVQARARGLKPGAEGWPESAYNGDYIQDIANDFLAKKTVSASDGLPVTASGDIDDIESI 240

Query: 241 RRFAVAYLRHEQDLDLQAFGVKFDNYYLESSLYADGKVAAAVDALVAAGKTYEQDGALWL 300
           R FAVAYLR EQDLDLQAFGVKFDNYYLESSLY DGKVAA VDAL+ A KTYE DGALWL
Sbjct: 241 RAFAVAYLRREQDLDLQAFGVKFDNYYLESSLYNDGKVAATVDALIKADKTYELDGALWL 300

Query: 301 RTTDYGDDKDRVMKKTDGTYTYFVPDVAYHINKWQRGYGKVINIQGSDHHGTIARVRAGL 360
           RTTDY DDKDRVMKK+DGTYTYFVPDVAYH  KWQRG+ + IN+QGSDHHGTIARVRAGL
Sbjct: 301 RTTDYRDDKDRVMKKSDGTYTYFVPDVAYHTVKWQRGFTQAINVQGSDHHGTIARVRAGL 360

Query: 361 QAVGVGIPLGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSAGEPVEGQERDL 420
           QA+ +GIP GYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWS GE VEGQERDL
Sbjct: 361 QALDIGIPQGYPDYVLHKMVTVMRNGEEVKISKRAGSYVTLRDLIEWSNGETVEGQERDL 420

Query: 421 TRGRDAVRFFLISRKADTEFVFDVDLALAQSDENPVYYVQYAHARICTVLGKSGVDEEAL 480
           TRGRDAVRFFLISRKADTEFVFDVD+AL+QSDENPVYYVQYAHARIC+VL +    +EA 
Sbjct: 421 TRGRDAVRFFLISRKADTEFVFDVDVALSQSDENPVYYVQYAHARICSVLAQWTDGDEAA 480

Query: 481 KTSADLSLLTAPREASLLAKLAEYPDMLAHALQELGPHQVAFYLRDLAGELHSYYNAERV 540
               DLS LTAPREA+LLAKLAEYP+ L  AL+ELGPHQVAFYLRDLA ELHSYYNAERV
Sbjct: 481 LLDVDLSPLTAPREAALLAKLAEYPEALQRALEELGPHQVAFYLRDLAAELHSYYNAERV 540

Query: 541 LVDDVPTRSARLALLSATRQVLRNGLALLGVSAPARM 577
           LVDDV  + ARL L+ ATRQVLRNGLAL+GVSAPARM
Sbjct: 541 LVDDVALKMARLTLMHATRQVLRNGLALIGVSAPARM 577


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,085,525
Number of extensions: 44658
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 490
Effective length of database: 713,682
Effective search space: 349704180
Effective search space used: 349704180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)