BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4213.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093384|ref|YP_001098459.1| hypothetical protein HEAR0094 [...   155   2e-39

>gi|134093384|ref|YP_001098459.1| hypothetical protein HEAR0094
           [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  155 bits (391), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 116/193 (60%), Gaps = 22/193 (11%)

Query: 30  AVGVALMITKSPIPFVNKVARPERT-DPTPAQAADPNRPLYGNRDIAREAARDQQQSQTP 88
           AVGVA++I K+P+PF NK A  ++T  P   +  DPNRPLYG +   +E          P
Sbjct: 35  AVGVAMVIYKTPLPFTNKGATVDKTVTPANGELTDPNRPLYGKKQPVKE----------P 84

Query: 89  VPPNTATAQPVPPVAPAPQASTPAATAPSKPTETASKPAATTPSASAAKNDTNDDKWTYF 148
           VP             PAP  +      P       +K  A    A AA+ ++ D+KW Y+
Sbjct: 85  VPGT-----------PAPTVAEETIKPPVVDKAAQAKEKAEAAKAEAARAESADEKWIYY 133

Query: 149 LQTGAFRDQADAESARAKLALLGFEAKVTERSADSGVLYRVRIGPFEHAEAMNRTRSKLS 208
           LQ GAFR+ ADAES +AKLAL+GFEA V+ER A++G L+RVRIGPF   E MNR R+KLS
Sbjct: 134 LQAGAFRETADAESMKAKLALMGFEATVSERQAETGTLHRVRIGPFGQLETMNRVRTKLS 193

Query: 209 DNGVDAAIVRIPK 221
           DNGVD A+VRI K
Sbjct: 194 DNGVDVAVVRIGK 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.312    0.127    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 255,194
Number of extensions: 6897
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)