BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4212.p
         (235 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093385|ref|YP_001098460.1| Thiol:disulfide interchange pro...   295   1e-81

>gi|134093385|ref|YP_001098460.1| Thiol:disulfide interchange
           protein dsbA [Herminiimonas arsenicoxydans]
          Length = 219

 Score =  295 bits (755), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 176/222 (79%), Gaps = 4/222 (1%)

Query: 1   MRFHQKLLAAVSFGLLAMTASVGASASPANPQVGSDYRVLEQAQPTDSGNKVEVTEFFWF 60
           MRF Q LLA  + GL+A TA   + A+P N   G+DYR LE+AQ TDSG KVEVTEFFW+
Sbjct: 1   MRFIQHLLAVATLGLMAATAGA-SPAAPIN---GTDYRTLEKAQQTDSGKKVEVTEFFWY 56

Query: 61  DCPHCAAWDPSLTAWVKKQGDKINFKKVPVAFRDTFVPQQKLYYTLEAMGKAEELTPKIF 120
            CPHC A +P+L AWVKK  DKI FK+VPVAFR +F+PQQKLYYT+EA+G  + L  ++F
Sbjct: 57  SCPHCEALEPTLQAWVKKNADKIVFKRVPVAFRASFIPQQKLYYTIEALGMVDTLHARVF 116

Query: 121 RAIHVDGERINTDKTILAYIEKIGLDKQKFLDLYNSFGIQTKARRAAQLQEAYKVDGVPM 180
           RAIH++ ++++TDK IL +I K G+D +KF D YNSFG+QTK +RAAQLQEAYKVDGVPM
Sbjct: 117 RAIHIERQQLDTDKQILDFIAKQGVDAKKFADTYNSFGVQTKVQRAAQLQEAYKVDGVPM 176

Query: 181 IAIDGRYVTSPAVVGVALANQPESMQQAAALQVMDHLVAKVA 222
           IAIDGRYVTSP++VG AL N+PE++   A LQVMDHLVAK A
Sbjct: 177 IAIDGRYVTSPSIVGAALGNRPEAVLHDATLQVMDHLVAKAA 218


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 410,644
Number of extensions: 16230
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 156
Effective length of database: 740,042
Effective search space: 115446552
Effective search space used: 115446552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)