BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4211.p (268 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herm... 357 e-100 gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrie... 121 3e-29 gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 86 1e-18 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 84 5e-18 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 84 9e-18 >gi|134093386|ref|YP_001098461.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 357 bits (917), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/256 (73%), Positives = 207/256 (80%) Query: 11 ERVFLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTDH 70 +RVF+TGASSG+G ALA YA GA LGLVARR L L ASLP+ ERHR+Y LDV++H Sbjct: 9 KRVFITGASSGLGAALARQYANEGATLGLVARRGEVLRELAASLPNAERHRVYALDVSNH 68 Query: 71 AALAAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFV 130 AALA AA F+A D+VIANAGIS+GTLTEY EDL FE+I A NVTAT ATF PF+ Sbjct: 69 AALANAAADFIAAAQGIDIVIANAGISRGTLTEYTEDLHVFEKIFATNVTATVATFAPFI 128 Query: 131 ARMKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVV 190 A MKAQ A + RLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVEL GIKVV Sbjct: 129 ATMKAQAAAGQTGARLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELQKDGIKVV 188 Query: 191 TIAPGYIDTPMTRVNSYRMPFLMPVERFAQRAVQSIAEGVSYRVIPWQMGVVAKLLRLLP 250 TIAPGYIDTPMT+VN Y MPFLMPVE+FA+R V +IA G SYRVIPWQMGVVAK+LRLLP Sbjct: 189 TIAPGYIDTPMTQVNDYAMPFLMPVEKFAERGVATIAAGCSYRVIPWQMGVVAKVLRLLP 248 Query: 251 NWLYDMAFARAPHKKR 266 NWLYD+ F AP KKR Sbjct: 249 NWLYDLLFTNAPRKKR 264 >gi|134095604|ref|YP_001100679.1| putative 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 255 Score = 121 bits (304), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/254 (35%), Positives = 132/254 (51%), Gaps = 27/254 (10%) Query: 10 QERVFLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTD 69 +RV++ GAS+GIG A A +GA + L ARR EL A+ A HP I VLD+ D Sbjct: 10 DKRVWVIGASTGIGAATAQKLLAQGARVALSARRP-ELLAMVAD-GHPNA-LIAVLDIVD 66 Query: 70 HAALAAAAEAFMAEFGMADVVIANAGISQGTLTEYQE------DLAAFERILAVNVTATF 123 HA+++AA M ++ D+V+ AG Y E DL+A R++ +N+ T+ Sbjct: 67 HASVSAAHTLIMQQWQGIDLVLIIAG-------GYHEMRADSFDLSAAYRLIDLNIRGTY 119 Query: 124 ATFTPFVARMKAQPEAQRRRCRLVGIG---SVAGIRGLPGAGAYSASKAAVISYCESLRV 180 + + AQ GIG SVAG GLP A Y +KAA+I+ CESL + Sbjct: 120 NCLDLVLPTLLAQGNG--------GIGIVASVAGYSGLPKALIYGPTKAALINLCESLYI 171 Query: 181 ELNASGIKVVTIAPGYIDTPMTRVNSYRMPFLMPVERFAQRAVQSIAEGVSYRVIPWQMG 240 +L+ GI I PG+++TP+T N + MP ++ AQ + + G + P + Sbjct: 172 DLHPRGIGAYLINPGFVETPLTAGNDFPMPAMISANEAAQELLHGLERGQFHIHFPRRFT 231 Query: 241 VVAKLLRLLPNWLY 254 + ++LRLLP LY Sbjct: 232 NILRILRLLPYRLY 245 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 7/183 (3%) Query: 13 VFLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTDHAA 72 V +TGASSG G +A +A++G + RR L+ L A L +DVTD + Sbjct: 3 VLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVL--TVAMDVTDKHS 60 Query: 73 LAAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFVAR 132 + AA ++ AE+ DV+I NAG++ G L +E ++ N V R Sbjct: 61 ITAALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQWETMIETNCKGLVT-----VTR 115 Query: 133 MKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVTI 192 + +R R ++ IGS AG PGA Y A+KA V + +LR +L +G++ + Sbjct: 116 LVLPDMLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNL 175 Query: 193 APG 195 APG Sbjct: 176 APG 178 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 84.3 bits (207), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 5/173 (2%) Query: 34 GAVLGLVARRAAELEALRASLP-HPERHRIYVLDVTDHAALAAAAEAFMAEFGMADVVIA 92 GA + L ARR L+ LRA + + LDVTD+A++ +A E G D+++ Sbjct: 3 GAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVN 62 Query: 93 NAGIS-QGTLTEYQEDLAAFERILAVNVTATFATFTPFVARMKAQPEAQ-RRRCRLVGIG 150 NAG++ +G L + + A+ ++ N F RM A+ + +++ R++ I Sbjct: 63 NAGVAARGRLLDVTPEEYAY--VMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIA 120 Query: 151 SVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVTIAPGYIDTPMTR 203 SVAG+R +P GAYS SKAA++ +++ VE GI V I PGYI T + + Sbjct: 121 SVAGLRVMPELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQ 173 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 83.6 bits (205), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 12/192 (6%) Query: 14 FLTGASSGIGMALASAYARRGAVLGLVARRAAELEALRASLPHPERHRIYVLDVTDHAAL 73 +TGAS GIG A+A A A++G + ++ +E A S E + VLDV D A Sbjct: 12 LVTGASRGIGRAIAQALAKQG--VKVIGTATSESGAAAISEYLAESGKGVVLDVNDAARS 69 Query: 74 AAAAEAFMAEFGMADVVIANAGISQGTLTEYQEDLAAFERILAVNVTATFATFTPFVAR- 132 A + EFG +++ NAGI+Q L +D ++ ++A N+T + + V R Sbjct: 70 VALIDEIQKEFGTVTILVNNAGITQDQLAMRMKD-EEWDSVIATNLT-SVGRLSRAVLRG 127 Query: 133 -MKAQPEAQRRRCRLVGIGSVAGIRGLPGAGAYSASKAAVISYCESLRVELNASGIKVVT 191 MKA + R++ I SV G G G Y+A+KA V +L E+ + I V Sbjct: 128 MMKA------KHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNC 181 Query: 192 IAPGYIDTPMTR 203 +APG+IDT MT+ Sbjct: 182 VAPGFIDTDMTK 193 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 389,982 Number of extensions: 12243 Number of successful extensions: 73 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 9 Length of query: 268 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 188 Effective length of database: 736,747 Effective search space: 138508436 Effective search space used: 138508436 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)