BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4210.p
         (317 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093409|ref|YP_001098484.1| methionyl-tRNA formyltransferas...   468   e-133

>gi|134093409|ref|YP_001098484.1| methionyl-tRNA formyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 317

 Score =  468 bits (1203), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/316 (76%), Positives = 271/316 (85%)

Query: 1   MKIIFAGTPEFAAVALEALYAAGHQITLVLTQPDRPAGRGMQLQASPVKQCALKHGTPVA 60
           MKIIFAGTPEFAAVAL AL+AAG +I LVLTQPDRPAGRGMQLQAS VKQ AL H  PVA
Sbjct: 1   MKIIFAGTPEFAAVALAALHAAGFEIPLVLTQPDRPAGRGMQLQASAVKQFALAHKIPVA 60

Query: 61  QPVSLRLNGKYPDVAQEAHALLQSTPHDVMVVAAYGLILPRSVLDIPRYGCINIHGSLLP 120
           QP+SLRL+GKYPDVAQEAH LL++TPHDVMVVAAYGLILP+SVLDIP  GC+NIH SLLP
Sbjct: 61  QPISLRLDGKYPDVAQEAHDLLRATPHDVMVVAAYGLILPQSVLDIPPLGCLNIHASLLP 120

Query: 121 RWRGAAPIHRAIEAGDAETGITIMQMEEGLDTGPMMLIESLPIQEDDTTGSLHDKLAALG 180
           RWRGAAPIHRAIE GD +TGITIMQME GLDTGPM+L+ESLPI  DDTT SLHDKLA LG
Sbjct: 121 RWRGAAPIHRAIEVGDEKTGITIMQMELGLDTGPMLLMESLPIAADDTTASLHDKLARLG 180

Query: 181 GKMIVEALDKLERGELPATPQPEQGANYAAKIAKEEAALDFSQSAEQLARRIRAFNPFPG 240
           G+MIVEAL KLE+GEL ATPQPE GANYAAKIAKEEA LD  QSA++LAR+IRAFNPFPG
Sbjct: 181 GEMIVEALLKLEKGELTATPQPEAGANYAAKIAKEEATLDLRQSAQELARKIRAFNPFPG 240

Query: 241 ATGRFGDTVVKLWQARPVKVAQQGEPGQVLSADAQAGIVVACGEGALLLTELQKPGGKRL 300
           A G    T VK WQA+ ++ + Q   GQV+SA+AQ G+V+ACG+GAL +TELQKPGGKRL
Sbjct: 241 AMGICNGTPVKFWQAQALECSNQWPAGQVISANAQDGVVIACGDGALRVTELQKPGGKRL 300

Query: 301 PAAQFLTGFPMEGGRL 316
           PAA+F+ GF +E  R 
Sbjct: 301 PAAEFIKGFALEAQRF 316


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 645,479
Number of extensions: 27826
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 235
Effective length of database: 730,157
Effective search space: 171586895
Effective search space used: 171586895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)