BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4202.p
         (229 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094672|ref|YP_001099747.1| putative multiple antibiotic re...   319   9e-89

>gi|134094672|ref|YP_001099747.1| putative multiple antibiotic
           resistance protein MarC [Herminiimonas arsenicoxydans]
          Length = 226

 Score =  319 bits (817), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 188/225 (83%), Gaps = 1/225 (0%)

Query: 1   MLILFLKAVLLIPVTLLPILNPLGIAPVFANLLGNVSRSTEKRIARQVAINCWFMLVAAI 60
           MLILF KA +LIP+TL+PILNP G A +FA+L G++ R  EKR+ARQVAINC+ ML+  +
Sbjct: 1   MLILFFKAAILIPITLVPILNPFGNAAIFASLAGDIDRDAEKRLARQVAINCFVMLLGTM 60

Query: 61  FIGSHVLTFFGISLPIVRVGGGLLVAVSGWKMLNDNSQDSSIPTQVAKSYDDDLPDDEIK 120
           FIGSHVL FFGISLPIVR+GGG+LVA +GW++LND  QD  I TQVA    +   +D+ K
Sbjct: 61  FIGSHVLMFFGISLPIVRIGGGILVAATGWRLLNDKGQDD-IRTQVASKPREVWSEDDFK 119

Query: 121 ARSFYPMSFPLTVGPGTIAASITLGANTPTRLLDWVISVGSAALGAALTALVIFLCYNYA 180
            RSFYP+SFPLTVGPGTIAASITLGA+ P+RL +  +S+GSAALGAA+TALVIFLCY YA
Sbjct: 120 VRSFYPISFPLTVGPGTIAASITLGASAPSRLSNLFVSIGSAALGAAMTALVIFLCYRYA 179

Query: 181 HKLVNLMGRLGTMVVLRLSAFILLCIGIQIFWSGMAALLAEAGIS 225
           +K+V L+GRLGTMVVLRLSAFILLCIGI+IFW GM  LLAEAGI+
Sbjct: 180 NKMVRLLGRLGTMVVLRLSAFILLCIGIEIFWQGMLGLLAEAGIT 224


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 357,501
Number of extensions: 12846
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 150
Effective length of database: 740,042
Effective search space: 111006300
Effective search space used: 111006300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)