BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4201.p
         (217 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096046|ref|YP_001101121.1| ATP-dependent protease La [Herm...   137   5e-34

>gi|134096046|ref|YP_001101121.1| ATP-dependent protease La
           [Herminiimonas arsenicoxydans]
          Length = 207

 Score =  137 bits (345), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 18/205 (8%)

Query: 17  IPLFPLASTLFPQGRLPLQIFEVRYLDMIRKCIAEGSSFGVVALTDGSEVRRPGQTERFV 76
           +PLFPL + LFP G LPL++FE RY+DM+R C+   + FG+V +  G EV    + E   
Sbjct: 8   LPLFPLNAVLFPDGILPLKVFETRYIDMVRDCMKRKAPFGIVLIKSGPEVGVLAEPE--- 64

Query: 77  GVGTVARIQEWSTPSPGLMRIACLGGERFRILQAEQQKHGLWTAQVEMMEDDHAVSIPEE 136
             G +A I  W  P  G++ +   GG RFRIL+   +K    TA+VEM+E    V + + 
Sbjct: 65  ATGCLAHIVAWDAPQLGVLLLRIQGGARFRILETRTEKDQHLTARVEMLETVSGVLLKQH 124

Query: 137 LRNTAQALENLLQSVLR---------QGLPDSEVPIAAPYRLDDCGWVANRWAEMMPIRV 187
                QA  ++L  V+R         QG  D + P     +L D GWVANRW+E++PI +
Sbjct: 125 -----QACADILALVIRDINTKGRIEQG-ADFDTPFPETLQLHDAGWVANRWSEILPIPM 178

Query: 188 ELKQSLLALDNPLLRLELVQDALDE 212
           + +Q LL LD+P  RL ++   L +
Sbjct: 179 KARQKLLELDDPQSRLTIIHQYLQQ 203


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 437,916
Number of extensions: 17014
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 139
Effective length of database: 743,337
Effective search space: 103323843
Effective search space used: 103323843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)