BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4193.p
         (566 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096616|ref|YP_001101691.1| preprotein translocase membrane...   712   0.0  

>gi|134096616|ref|YP_001101691.1| preprotein translocase membrane
           subunit [Herminiimonas arsenicoxydans]
          Length = 569

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/572 (62%), Positives = 434/572 (75%), Gaps = 10/572 (1%)

Query: 1   MDIKRTVLWVVFSFSLLLLWDSWMRHNGHQSMFFPSATSTQEQAA---ANPASPTASPTG 57
           MDIKRTVLWV+FSFSLL+LWD++ R+ G  S+FF S T+ Q  A     N A+ TA    
Sbjct: 1   MDIKRTVLWVIFSFSLLMLWDNYNRYTGKPSIFFDSTTTQQAAAPAATGNNAAKTADAPT 60

Query: 58  SPVPQAGTPAPAPGAVPGAEVAAATKGETITITTDLVKASIDTVGGELKRLELLKEPDVV 117
           +    A + A  PG   GA   AA K E ITITTDL+K  IDT GGE++ LELLK  +  
Sbjct: 61  AATTAATSGANTPGVPDGA---AAVKSEVITITTDLMKIGIDTAGGEVRHLELLKHHESG 117

Query: 118 DPTKNVVLFDSEPGHMYLAESGLIGGPFPNHKTIFTAQPGPRTLDNGNEVQLVLVAEQGG 177
           D +KNVVLFD    H YL ++GLIGG +PNHK++F A PGPRTLD+ N+VQLVL +EQ G
Sbjct: 118 DESKNVVLFDENGQHTYLGQTGLIGGAYPNHKSMFAAVPGPRTLDSANQVQLVLQSEQQG 177

Query: 178 VKLTKTYTFKRDSYLIDVKHTVTNTTGAPINPSLYLQLVRDGNKPGGESHFY-STFTGPA 236
           VKL KT+TFKR  Y +D+KH V N T   I PSLYLQLV DG+  GG S F  S FTGPA
Sbjct: 178 VKLIKTFTFKRGEYKVDIKHDVVNNTSTAITPSLYLQLVHDGSALGGGSMFMASAFTGPA 237

Query: 237 VYSDAEHFEKLDFEKIANGKQQHVNKADNGWIAMVQHYFVSAFIPPQKAERDIFSKKVGD 296
           +Y++A+ F+K+ FE I  GK +H  K ++GWIA+VQHYFVSAF+PP    R+ F+KK+  
Sbjct: 238 IYTEADKFQKVTFESIEKGKAEHAMKGESGWIALVQHYFVSAFVPPANTPREYFTKKLAT 297

Query: 297 NLYAIGSILPLGTVAPNASVTMDSQLYSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIF 356
           NLYA+G+ILP+GTVAP A+ +MD+ +YSGP  SK L+A+APG +LV+DYG LT+IA+PIF
Sbjct: 298 NLYAVGTILPMGTVAPGATASMDTTMYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIF 357

Query: 357 WLMTHIHNLVGNWGWTIILLTVLIKLVFFPLSAASYRSMAKMKAVSPKMQAIRERHKNDP 416
           WLM  IH ++GNWGWTII+LT++IKL FFPLSAA YRSMAKMK V+PKM  IR R+K +P
Sbjct: 358 WLMMQIHQILGNWGWTIIVLTIVIKLAFFPLSAAGYRSMAKMKLVTPKMTDIRTRYKGEP 417

Query: 417 QAMNREMMALYKTEKINPLGGCLPIVIQIPVFISLYSVLLASVEMRGAPWLGWVHDLTAP 476
           Q MN  MM LYK EKINP+GGC P+++QIPVFISLY VLLASVE+R A WL W+HDL AP
Sbjct: 418 QKMNAAMMELYKKEKINPIGGCFPMLVQIPVFISLYWVLLASVEIRNASWL-WIHDLAAP 476

Query: 477 DRLFGT--LPYFNMPIGLLPIIMAASMFLQTKLNPTPPDPVQAKVMMFMPLVFSVMFFFF 534
           D LFG+  +  F++ IG+LPI+MA SMF+QTKLNPTPPDP+QAKVMMFMP+ FSVMFFFF
Sbjct: 477 DILFGSYHIGTFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSVMFFFF 536

Query: 535 PSGLVLYWVTNNILSIAQQWVITRNIESGKTK 566
           P+GLVLYWV NNILSIAQQW I   +  GK K
Sbjct: 537 PAGLVLYWVVNNILSIAQQWFINEKLLGGKAK 568


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 969,150
Number of extensions: 38591
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 479
Effective length of database: 713,682
Effective search space: 341853678
Effective search space used: 341853678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)