BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4188.p (701 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096324|ref|YP_001101399.1| elongation factor G [Herminiimo... 1100 0.0 gi|134094178|ref|YP_001099253.1| peptide chain release factor 3 ... 173 2e-44 gi|134095256|ref|YP_001100331.1| GTP-binding protein LepA [Hermi... 97 2e-21 gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor f... 93 6e-20 gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiim... 62 9e-11 >gi|134096324|ref|YP_001101399.1| elongation factor G [Herminiimonas arsenicoxydans] Length = 702 Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/700 (75%), Positives = 606/700 (86%), Gaps = 1/700 (0%) Query: 1 MSRKTRIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERG 60 M+RKT IE YRNIGISAHIDAGKTTTTER+LFYTGVNHK+GE H G+AT DWMEQEQERG Sbjct: 1 MARKTPIERYRNIGISAHIDAGKTTTTERVLFYTGVNHKLGETHEGSATTDWMEQEQERG 60 Query: 61 ITITSAATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQ 120 ITITSAA T FWKGMA N P H INIIDTPGHVDFTIEVERSMRVLDGA MVY +VGGVQ Sbjct: 61 ITITSAAVTCFWKGMANNLPAHHINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQ 120 Query: 121 PQSETVWRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEERLKGRAVPIQIPVGAEDHFS 180 PQSETVWRQANKYKVPR+AFVNKMDR GA+FF+V +Q+ RLK VPIQ+P+GAED F Sbjct: 121 PQSETVWRQANKYKVPRLAFVNKMDRTGANFFKVYEQMRARLKANPVPIQVPIGAEDQFF 180 Query: 181 GVIDLVKMKAIIWDEASQGVLFKYEDIPLELEDTARQWRDHMVEQAAEANEELLEKYLSG 240 GV+DL+KMK+IIWDEASQG+ F+Y +IP L A++WR++MVE AAEA+EEL+ KYL Sbjct: 181 GVVDLIKMKSIIWDEASQGMKFEYGEIPANLLAEAQKWRENMVEAAAEASEELMNKYLEE 240 Query: 241 NPLTEDDIKRGLRLRTVANEIVPMLAGSAFKNKGVQAMLDAVIDYLPSPVDVPAIAGHGE 300 L+E +IK LR RT+ANEIVPM+ G+AFKNKGVQAMLDAVIDYLPSP+D+P + G E Sbjct: 241 GDLSEAEIKAALRTRTIANEIVPMMCGTAFKNKGVQAMLDAVIDYLPSPIDIPPVPGLNE 300 Query: 301 DDSEIERHPSDEEPFSALAFKIMTDPFVGQLTFFRVYSGLVNSGDTVYNPVKGKKERLGR 360 D I R D E FSALAFKI TDPFVGQL F R YSG +NSGDTV N VK KKER+GR Sbjct: 301 SDEPIVRKAEDGEKFSALAFKIATDPFVGQLCFIRCYSGTLNSGDTVLNSVKEKKERIGR 360 Query: 361 ILQMHANERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFPEPVISQAVEP 420 I+QM AN+R+EIKE+ AGDIAA VGLKD TTGDTL D + ++LERM+FPEPVISQAVEP Sbjct: 361 IVQMQANQREEIKEMRAGDIAAVVGLKDTTTGDTLCDDKAFVVLERMVFPEPVISQAVEP 420 Query: 421 KTKADQEKMGIALNRLAQEDPSFRVHTDEESGQTIMSGMGELHLEILVDRMKREFNVEAT 480 KTKADQEKMG+ALNRLA EDPSFRV TDEESGQTI++GMGELHL+I+VDRMKREFNVEAT Sbjct: 421 KTKADQEKMGLALNRLAAEDPSFRVRTDEESGQTIIAGMGELHLDIIVDRMKREFNVEAT 480 Query: 481 VGKPQVAYREAIRKAVEDVEGKFVKQSGGRGQYGHVVIKLEPQPAGKGYEFVDAIKGGVV 540 VGKPQVAYRE IRK E++EGKFVKQSGGRGQYGHVV+K+EPQ GKG+EFVDAIKGG V Sbjct: 481 VGKPQVAYRETIRKTCEEIEGKFVKQSGGRGQYGHVVLKIEPQEPGKGFEFVDAIKGGTV 540 Query: 541 PREFIPAVDKGIQESLKAGVLAGYPVVDVKATLTFGSYHDVDSNENAFRMAGSMAFKEAM 600 PRE+IPAV+KG++E+L +GVLAGYPVVDVK TL FGSYHDVDSNENAFRMA SMAFK+ Sbjct: 541 PREYIPAVEKGVRETLTSGVLAGYPVVDVKVTLFFGSYHDVDSNENAFRMAASMAFKDGC 600 Query: 601 KRAGPMLLEPMMQVEVETPEEFMGNVMGDLSSRRGMVQGMEDMV-GGGKLVRAEVPLSEM 659 ++A P++LEPMM VEVETPE++ G VMGDLSSRRGMVQGM+++ GGGK+++AEVPLSEM Sbjct: 601 RKASPVILEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGMDEIAGGGGKIIKAEVPLSEM 660 Query: 660 FGYSTTLRSLSQGRATYSMEFKHYAEAPRQVVEQLSGSKA 699 FGY+T+LRS +QGRATYSMEFKHY+EAP+ V++ + SKA Sbjct: 661 FGYATSLRSATQGRATYSMEFKHYSEAPKNVIDAIVTSKA 700 >gi|134094178|ref|YP_001099253.1| peptide chain release factor 3 [Herminiimonas arsenicoxydans] Length = 564 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/518 (27%), Positives = 241/518 (46%), Gaps = 48/518 (9%) Query: 5 TRIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGA----ATMDWMEQEQERG 60 + + R GI +H DAGKTT TE++L ++G G V AT DWM+ E++RG Sbjct: 38 SEVARRRTFGIISHPDAGKTTLTEKLLLFSGAIQLAGTVKGRKSARHATSDWMDIEKQRG 97 Query: 61 ITITSAATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQ 120 I++ S+ M Y +H +N++DTPGH DF+ + R + +D A+MV D+ GV+ Sbjct: 98 ISVASSV-------MQFEYRDHVVNLLDTPGHQDFSEDTYRVLTAVDSALMVIDAAKGVE 150 Query: 121 PQSETVWRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEERLKGRAVPIQIPVGAEDHFS 180 Q+ + P I F+NK+DR D + ++E LK P+ P+G +F Sbjct: 151 TQTIKLLNVCRMRNTPIITFMNKLDRETRDPLELLDELESVLKIECAPVTWPIGMGKNFR 210 Query: 181 GVIDLVKMKAIIWDEASQGVLFKYEDIPLELEDTARQWRDHMVEQAAEANEEL-LEKYL- 238 GV L++ + +++ S+ +E + + D R + E + E+L +E L Sbjct: 211 GVYHLLRDEIMLFAPGSEKADQTFEVV--KGIDNPR-----LAEMFPQEIEQLKMEVELV 263 Query: 239 --SGNPLTEDDIKRGLRLRTVANEIVPMLAGSAFKNKGVQAMLDAVIDYLPSPVDVPAIA 296 + +P D G R P+ GSA N GV+ +L+A++D+ P Sbjct: 264 HGASHPFDLDAFLNGTR--------TPVFFGSAINNFGVREILNALLDWAQPP------- 308 Query: 297 GHGEDDSEIERHPSDEEPFSALAFKIMT--DP-FVGQLTFFRVYSGLVNSGDTVYNPVKG 353 E D+ + E PFS FKI DP ++ F RV SG G V + Sbjct: 309 --RERDATVRSVKPIELPFSGFVFKIQANMDPAHRDRIAFLRVCSGRFERGMKVKHLRLN 366 Query: 354 KKERLGRILQMHANERKEIKEVFAGDIAAAVGLKDVTTGDTLSDPEHPIILERMIFP--E 411 ++ ++ ++ A+ R++++E +AGDI ++ GD+ S+ E +L+ P Sbjct: 367 REIKVSSVVTFMASSREQVEEAYAGDIIGLPNHGNMQIGDSFSEGE---LLQFTGIPYFA 423 Query: 412 PVISQAVEPKTKADQEKMGIALNRLAQEDPSFRVHTDEESGQTIMSGMGELHLEILVDRM 471 P +AV + +++ L +L +E + +V S I+ G+G L E++ R+ Sbjct: 424 PDFFRAVRIRNPLKIKQLHKGLQQLGEEG-AIQVFKPVNSSDLILGGVGVLQFEVVASRL 482 Query: 472 KREFNVEATVGKPQVAYREAIRKAVEDVEGKFVKQSGG 509 E+ V+A ++ I + + F + S G Sbjct: 483 LNEYGVDAVFEGTSISSARWITCDDKKMLADFERSSAG 520 >gi|134095256|ref|YP_001100331.1| GTP-binding protein LepA [Herminiimonas arsenicoxydans] Length = 597 Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 7 IENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITSA 66 + N RN I AHID GK+T +RI+ G + + A +D M+ E+ERGITI + Sbjct: 1 MNNIRNFSIIAHIDHGKSTLADRIIQLCG---GLSDREMEAQVLDSMDLERERGITIKAQ 57 Query: 67 ATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSETV 126 +K G + +N+IDTPGHVDF+ EV RS+ +GA++V D+ GV+ Q+ Sbjct: 58 TAALTYKARDGQV--YNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVAN 115 Query: 127 WRQANKYKVPRIAFVNKMDRVGADFFRVQKQIEE 160 A V + +NK+D AD +IE+ Sbjct: 116 CYMALDLGVEVVPVLNKIDLPNADPPAAMAEIED 149 >gi|134095607|ref|YP_001100682.1| GTP-binding elongation factor family protein [Herminiimonas arsenicoxydans] Length = 612 Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 9/139 (6%) Query: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITSAATTA 70 RNI I AH+D GKTT +++L +G ++ A MD + E+ERGITI S Sbjct: 9 RNIAIIAHVDHGKTTLVDQLLRQSGTFRDNQQID--ARVMDSGDIEKERGITILSKNCAV 66 Query: 71 FWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSETVWRQA 130 +KG INI+DTPGH DF EVER + ++D +++ D+ G PQ+ V R+A Sbjct: 67 EYKGT-------HINIVDTPGHADFGGEVERVLSMVDSVLLLVDAQEGPMPQTRFVTRKA 119 Query: 131 NKYKVPRIAFVNKMDRVGA 149 + I +NK+DR GA Sbjct: 120 LALGLKPIVVLNKIDRPGA 138 Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 33/229 (14%) Query: 275 VQAMLDAVIDYLPSPVDVPAIAGHGEDDSEIERHPSDEEPFSALAFKIMTDPFVGQLTFF 334 ++ + DA+++++P+ D P + P + +VG++ Sbjct: 186 MEPLFDAILEHVPARQDDP------------------DAPLQLQITSLEYSSYVGKIGVG 227 Query: 335 RVYSGLVNS-GDTVY---NPVKGKKERLGRILQMHANERKEIKEVFAGDIAAAVGLKDVT 390 R+ +G V + D V+ K K R+ ++L +R + E AGDI G++++ Sbjct: 228 RILAGRVKALQDVVWMNGPDDKPTKARINQVLTFKGLDRVLVDEALAGDIVLINGIEEIG 287 Query: 391 TGDTLSDPEHPIILERMIFPEPVISQ--AVEPKTKADQEKMGIA-------LNRLAQEDP 441 G T+ P+HP L + EP ++ V A +E + L R + + Sbjct: 288 IGTTICAPDHPNGLPMLKVDEPTLTMNFMVNNSPLAGREGKFVTTRQIRDRLERELKANM 347 Query: 442 SFRVHTDEESGQTI-MSGMGELHLEILVDRMKREFNVEATVGKPQVAYR 489 + RV E T +SG GELHL IL++ M+RE E V +P+V ++ Sbjct: 348 ALRVVQSENDDSTYEVSGRGELHLTILIENMRRE-GFELAVSRPRVVFK 395 >gi|134096335|ref|YP_001101410.1| elongation factor Tu [Herminiimonas arsenicoxydans] Length = 396 Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 10/143 (6%) Query: 6 RIENYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHNGAATMDWMEQEQERGITITS 65 R + + N+G H+D GKTT T I T ++ K G G +D +E+ RGITI + Sbjct: 8 RTKPHVNVGTIGHVDHGKTTLTAAIA--TVLSKKFGGEAKGYDQIDNAPEEKARGITINT 65 Query: 66 AATTAFWKGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYDSVGGVQPQSET 125 + ++ +Y +D PGH D+ + +DGA++V + G PQ+ Sbjct: 66 SHVE--YETTTRHYAH-----VDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTRE 118 Query: 126 VWRQANKYKVPR-IAFVNKMDRV 147 A + VP I F+NK D V Sbjct: 119 HILLARQVGVPYIIVFLNKCDMV 141 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,336,737 Number of extensions: 57291 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 7 Length of query: 701 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 613 Effective length of database: 710,387 Effective search space: 435467231 Effective search space used: 435467231 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)