BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4185.p
         (308 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094305|ref|YP_001099380.1| recombination associated protei...   372   e-104

>gi|134094305|ref|YP_001099380.1| recombination associated protein
           [Herminiimonas arsenicoxydans]
          Length = 239

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 207/235 (88%)

Query: 62  LMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVVR 121
           ++ L TEKKLLP+TVINQVTK +AAE+EEQQGF PGRKQ KELKE VTDELLPRAFS+ R
Sbjct: 1   MLLLGTEKKLLPTTVINQVTKIKAAEIEEQQGFKPGRKQMKELKEDVTDELLPRAFSIWR 60

Query: 122 STWVWIDPVNGWLLVDAGSPAKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASDE 181
            TWVWIDPVNGWL+VDAGSPAKA+EV+KLL K++ K PL+TL  V SP AAMT WL +DE
Sbjct: 61  QTWVWIDPVNGWLVVDAGSPAKADEVIKLLIKSVDKLPLDTLHVVQSPVAAMTQWLLTDE 120

Query: 182 APNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIESGKQCTRLALTWADKVSFVL 241
           AP+GFTVDQDTELRST E KATVRYVRHTLEAED++RHI +GKQCTRLA++WADK+SFVL
Sbjct: 121 APSGFTVDQDTELRSTGEGKATVRYVRHTLEAEDVQRHIAAGKQCTRLAMSWADKISFVL 180

Query: 242 TENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMAGELAKLLSALVDALGGQ 296
           TE+L++KR+APLDV+KE+++   +NDDERFD D MLM GEL+++L+ LV ALGG+
Sbjct: 181 TESLAIKRVAPLDVIKENTDTTAQNDDERFDSDVMLMTGELSRMLADLVQALGGE 235


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 582,383
Number of extensions: 22845
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 227
Effective length of database: 733,452
Effective search space: 166493604
Effective search space used: 166493604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)