BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4182.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093909|ref|YP_001098984.1| hypothetical protein HEAR0661 [...   147   5e-37
gi|134094916|ref|YP_001099991.1| hypothetical protein HEAR1709 [...   120   5e-29

>gi|134093909|ref|YP_001098984.1| hypothetical protein HEAR0661
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score =  147 bits (370), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 5/231 (2%)

Query: 4   LRPSPQSIHHSLWRASQLAQGGARCIDTGFAELSQELPGRGWPTGALIDFLLQQPGVGEL 63
             P+  S+  S+W   QL    +  + TG+ +L +ELPG GWP   L++FLL   G+GEL
Sbjct: 9   FTPTMLSLPDSVWHGDQLGSYRSTPVATGYHDLDKELPGGGWPPSVLVEFLLPHHGIGEL 68

Query: 64  RLLGPALQSLAPRR--IALVQTPHAPHLIGWQQIGVEAARLLAVRTTTSADAAWAAEQIL 121
           RLL P L  L   R  + L+  P+ P       +G+   +++ +      D  WA EQ L
Sbjct: 69  RLLAPTLGPLTQSRKTLILLTPPYIPFAGALNDLGIRLKQVIVIEADKPIDRVWAVEQAL 128

Query: 122 KSDSCAALLLWQRHLRPESVRRLHLAAQSGQTLFVMLRPGSCAQDASPAPLRLALTAAPG 181
           KS S  ALL W   +R + +RRL LAA +G+ L  + RP S    +SPAPLRL    AP 
Sbjct: 129 KSASFGALLCWLPQVRTDHIRRLQLAAAAGEGLSFVFRPLSAQNQSSPAPLRLVCQPAPA 188

Query: 182 G-IAIDFIKRRGPLRAAPLF--VSLPSLNLLPHAPVDRRTPAFAAAGGVLS 229
           G ++++ IKRRGP+ AAP+   +SLP   + P A     +P+F     V+ 
Sbjct: 189 GRMSVEIIKRRGPVHAAPIILPLSLPRTLIKPLAARTVVSPSFETHSNVVD 239


>gi|134094916|ref|YP_001099991.1| hypothetical protein HEAR1709
           [Herminiimonas arsenicoxydans]
          Length = 259

 Score =  120 bits (302), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 109/214 (50%), Gaps = 5/214 (2%)

Query: 14  SLWRASQLAQGGARCIDTGFAELSQELPGRGWPTGALIDFLLQQPGVGELRLLGPALQSL 73
           S+W   Q+    ++ I +G+ EL Q+LP  GWP   L + LL  PGVGELRLL   L  +
Sbjct: 22  SIWLHDQIGASRSKAISSGYRELDQQLPHGGWPPSVLTELLLTNPGVGELRLLASTLTHI 81

Query: 74  AP--RRIALVQTPHAPHLIGWQQIGVEAARLLAVRTTTSADAAWAAEQILKSDSCAALLL 131
               + + ++   +          G++ +++  +     AD  WA EQ LKS S  ALL 
Sbjct: 82  TQTGKTVVVLAPAYLAVATSLAACGIDMSKVTLIEADKPADKIWAVEQALKSASFGALLC 141

Query: 132 WQRHLRPESVRRLHLAAQSGQTLFVMLRPGSCAQDASPAPLR-LALTAAPGGIAIDFIKR 190
           W    R + +RRLHLAA + Q    + RP      ASPAPLR L    A G ++++ IKR
Sbjct: 142 WLPQARDDHLRRLHLAAANTQGWTFLFRPLDAQTQASPAPLRMLCKPLAIGRLSVEIIKR 201

Query: 191 RGPLRAAPLFVSL--PSLNLLPHAPVDRRTPAFA 222
           RGP+   P+ + L  P + L P A      P F+
Sbjct: 202 RGPVHIEPIILPLEIPEILLKPLATRALGKPVFS 235


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 434,427
Number of extensions: 16267
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 2
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)