BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4177.p
         (432 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093360|ref|YP_001098435.1| putative oxidoreductase [Hermin...   550   e-158

>gi|134093360|ref|YP_001098435.1| putative oxidoreductase
           [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  550 bits (1416), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/408 (67%), Positives = 321/408 (78%)

Query: 11  SSRVAVIGAGPAGLMAAEVLAAHGVAVDVYDAMPSAGRKFLLAGRGGMNITHSEAQPDFL 70
           S +VAVIG GPAGLMAAEVL +HG+AVDVYDAMPS GRKFLLAG+GGMN+TH+EA   FL
Sbjct: 8   SRKVAVIGGGPAGLMAAEVLISHGMAVDVYDAMPSVGRKFLLAGKGGMNLTHTEAGAAFL 67

Query: 71  PRYGKRREQVAPFVRRFDGEQLRAWIHELGIETFVGSSGRVFPREMKAAPLLRAWLHRLR 130
            RYG R  Q+AP ++ FD + LRAW HELGIETFVGSSGRVFP +MKAAPLLRAWL  LR
Sbjct: 68  SRYGSRAPQIAPMLQAFDPDALRAWAHELGIETFVGSSGRVFPIDMKAAPLLRAWLKHLR 127

Query: 131 QAGVQFHMRHRWLGWQEDGALRLAHPEGEIAVRPDAVVLALGGGSWPRLGSDGSWVPLLQ 190
            AGV+FHMRHRWLGW E G LR A PEGE  V+ DA +LALGGGSW RLGSDG+W+PLL 
Sbjct: 128 DAGVKFHMRHRWLGWDETGHLRFATPEGECKVQADATILALGGGSWARLGSDGAWLPLLA 187

Query: 191 ARQVEVAPLLPSNCGFELDWSAHFRERFAGEPVKPVVASTAHASGGVQNRRGEFIVTAEG 250
              +  APL P+NCGF++ WS HF+ERFAG+PVK V+AS     G    R+GEF+VTA G
Sbjct: 188 QHGIAAAPLKPANCGFDIGWSTHFQERFAGQPVKAVIASCVAVDGSEYKRQGEFVVTATG 247

Query: 251 IEGSLVYAMSAALRDTIAAEGSARLYLDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLH 310
           IEGSL+YA+SA LR+ I  +G A L LDL P    E+V  E++ PRGARS++SHLQS++ 
Sbjct: 248 IEGSLIYALSAHLREQIIRQGYATLTLDLAPGKTFERVLDEVSQPRGARSMASHLQSKVG 307

Query: 311 LKGVKAGLLRELLSKEDFADMGKLARAIKALPLTVWRTRPLAEAISSAGGVSFEALDDAL 370
           + GVKAGLLRE+++KED+A   KLA+AIK LPL +   RPL EAISSAGGV FEALD+ L
Sbjct: 308 IAGVKAGLLREVVAKEDYAHPHKLAQAIKGLPLRLIAARPLDEAISSAGGVLFEALDERL 367

Query: 371 MLRALPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGAGVLHWLISAD 418
           M  A+PGVFCAGEMLDWEAPTGGYLL+ACFA+GR AG G   WL S D
Sbjct: 368 MAPAMPGVFCAGEMLDWEAPTGGYLLSACFASGRTAGLGAAAWLQSRD 415


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 911,008
Number of extensions: 40555
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 432
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 348
Effective length of database: 723,567
Effective search space: 251801316
Effective search space used: 251801316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)