BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4176.p
         (247 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   119   2e-28
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...   103   7e-24

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  119 bits (298), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 18/239 (7%)

Query: 2   DFRWSIIQGYAPLFAKGVLMTLQVSLVSILIGTVIGLLVGMLRLAEVQHGPWKWPTRLMR 61
           D  + +I    P    G+  TLQ++L + + G + G L+ + RL+  +          + 
Sbjct: 3   DLDFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKS---------LA 53

Query: 62  WLAGLYVAFFRGTPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVA 121
           +LA  YV   R  PL + I   +F V P+++Q      ITG   R ++   GA  S  + 
Sbjct: 54  FLAAAYVNLMRSIPLLLVIFWFYFLV-PVVLQT-----ITGS-ERPVQ--LGADRSAYIT 104

Query: 122 LSLNAGAYISEIFRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAI 181
             +   AY  EI RAGIQSI +GQ  AA +LG++Y   MR VVLPQAFR MLP L  + I
Sbjct: 105 FIMFEAAYFCEIMRAGIQSISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTI 164

Query: 182 TLLKDSSLVSAIGLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALLVARLENK 240
            L +D SLVS + + +   A+  +A   +R  E Y+ ++++YF ++  L+ +V +L+ +
Sbjct: 165 VLFQDVSLVSLLNVTDFVGASVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKR 223


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  103 bits (257), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 22/231 (9%)

Query: 17  KGVLMTLQVSLVSILIGTVIGLLVGMLRLAEVQHGPWKWPTRLMRWLAGL---YVAFFRG 73
            G+  TL V+  + +   V+G L+G+ R  E             RWL GL   YV  FR 
Sbjct: 23  SGLGWTLAVAFFAWIFAFVLGSLIGIARTTE------------KRWLVGLGGAYVELFRN 70

Query: 74  TPLFVQIMLIHFAVMPLLVQQEHGLLITGELARTIKQDYGAFLSGTVALSLNAGAYISEI 133
            PL VQ  + +F V+P LV      +IT  L  TI Q    F++  + L     + I+E 
Sbjct: 71  IPLLVQFFVWYF-VIPGLVPAVKTWVIT--LDPTIHQ----FVTAIICLGFFTSSRIAEQ 123

Query: 134 FRAGIQSIERGQSYAAASLGMNYGLTMRYVVLPQAFRRMLPPLGNEAITLLKDSSLVSAI 193
            R+GIQS+ RGQ  A  +LG+    T R+V+LP A+R ++PPL +E + L+K++++  +I
Sbjct: 124 VRSGIQSLPRGQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSI 183

Query: 194 GLAELAYAARTVAGTYARYWEPYITISVLYFSMTICLALLVARLENKYRAP 244
           GL EL +  R +     RY+E +   +++Y  + +    ++A +E +   P
Sbjct: 184 GLVELFFRTREMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVERRTAVP 234


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 451,626
Number of extensions: 18155
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 168
Effective length of database: 740,042
Effective search space: 124327056
Effective search space used: 124327056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)