BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4174.p (690 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded... 1149 0.0 gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas ... 319 3e-88 gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas ... 133 4e-32 gi|134093954|ref|YP_001099029.1| putative exonuclease V [Hermini... 93 5e-20 gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Hermi... 81 2e-16 >gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas arsenicoxydans] Length = 684 Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 536/678 (79%), Positives = 610/678 (89%), Gaps = 6/678 (0%) Query: 7 GLNKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAAL 66 GLN PQ EA+ YM GPCLVLAGAGSGKTRVITQKIAHLIE+CGYE+R++AALTFTNKAAL Sbjct: 11 GLNAPQREAIKYMDGPCLVLAGAGSGKTRVITQKIAHLIEDCGYEARHVAALTFTNKAAL 70 Query: 67 EMQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESKHLGLKDRFSIMDSDDCFSLVQEL 126 EMQERIAKLLK+PKQAK LTVSTFHSLGVKILRQE+K LGLKDRFSIMDSDDCFSLVQ++ Sbjct: 71 EMQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKELGLKDRFSIMDSDDCFSLVQDM 130 Query: 127 AVTTDKAIIRGIQNSISLWKNGLVDPDLAEKNARTEDEAQAARIYRSYVATLKAYQAVDF 186 A+TTDK ++R IQ +ISLWKNGL+DPD A A+ EDEAQAARIYRSYVATL AYQAVDF Sbjct: 131 AITTDKQLVRRIQTAISLWKNGLIDPDAALNQAKDEDEAQAARIYRSYVATLSAYQAVDF 190 Query: 187 DDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGVGKKPMFTAV 246 DDLIRLPVELFR NE VRD+WQRKLRYLL+DEYQDTNTCQYELVKLLVTG+GKKPMFTAV Sbjct: 191 DDLIRLPVELFRGNEAVRDKWQRKLRYLLVDEYQDTNTCQYELVKLLVTGIGKKPMFTAV 250 Query: 247 GDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNNPKLFDK 306 GDDDQAIYAWRGATIENLK L VDFP+L ++KLEQNYRSSTRILQAAN+VI NNPKLF+K Sbjct: 251 GDDDQAIYAWRGATIENLKQLQVDFPDLKVVKLEQNYRSSTRILQAANSVIGNNPKLFEK 310 Query: 307 TLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQARILEK 366 +LWSEHGLGDP+ V+ M D++ EA+QIAI LSAHRFERRAKF+DYAILYRGNHQ+R++E+ Sbjct: 311 SLWSEHGLGDPVKVLGMQDDDQEAEQIAIMLSAHRFERRAKFSDYAILYRGNHQSRVIEQ 370 Query: 367 SLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQATLEV 426 +LR+ERIPY +SGGQS+FDRAEIKDII+YLRL+ANQDDDPAFIRAVTTP+RGVGQ+TLE Sbjct: 371 ALRKERIPYTISGGQSFFDRAEIKDIISYLRLVANQDDDPAFIRAVTTPKRGVGQSTLET 430 Query: 427 LGTLAGQWQCSLFEAVYKGGLEDKLTDRQLLPLRKFCDFINALESRATRPGPSGSGAEAG 486 LG AGQWQCSLFEAV+KGGLE KL +RQL PLR+F +FIN LE+ A R G +A Sbjct: 431 LGAFAGQWQCSLFEAVFKGGLESKLAERQLTPLREFGNFINQLEAHAHREG------QAA 484 Query: 487 RVLDDMMEAINYEFYLYDSFEERAAQARWQNVVDFINWLKERACGGRDGEGEEKNLLEIT 546 +L+DMM+ INYE YLYD+F++R AQ++WQNV+DF WLKE+ GG+DG EK+LL++T Sbjct: 485 SLLEDMMKEINYEAYLYDNFDDRQAQSKWQNVIDFTTWLKEKGSGGKDGNDPEKSLLDLT 544 Query: 547 QMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTPPEAAAA 606 QMVALM+MLEG+DEE DAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPD P E A Sbjct: 545 QMVALMTMLEGKDEEPDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDAPIETLGA 604 Query: 607 RVEEERRLMYVGITRAQRSLHLSWCKRRKRAKEVIECQISRFVKEMRLDEGEAVPQESEK 666 R+EEERRLMYVGITRAQRSLH+SWCK+RKRA+E + C ISRF+KEM+LDEG+AVP E E Sbjct: 605 RIEEERRLMYVGITRAQRSLHVSWCKKRKRAREHVHCDISRFIKEMKLDEGDAVPTEDEI 664 Query: 667 ITPQARLANLKALLQKPR 684 ITPQ+RLANLKALLQKP+ Sbjct: 665 ITPQSRLANLKALLQKPK 682 >gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 762 Score = 319 bits (818), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 232/694 (33%), Positives = 356/694 (51%), Gaps = 52/694 (7%) Query: 8 LNKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALE 67 LN Q AV A P L+LAGAGSGKTRV+T +IA LI+ I A+TFTNKAA E Sbjct: 8 LNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTNKAAKE 67 Query: 68 MQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESKHLGLKDRFSIMDSDDCFSLVQELA 127 M R++ ++ P + + + TFH L ++LR + L F I+DS D S+++ L Sbjct: 68 MMTRLSAMM--PINTRGMWIGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMIKRLL 125 Query: 128 VTTDKAIIRGIQNSISLWKNGLVDPDLAEKNARTEDEA--QAARIYRSYVATLKAYQAVD 185 + + ++ + NG D L ++ D+ + +Y Y + VD Sbjct: 126 KANNIDDEKYPPRNLMYFINGAKDNGLRAQDVEAHDDYNRKMVELYEIYDQQCQREGVVD 185 Query: 186 FDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGVGKKPMFTA 245 F +L+ EL N+ +R+ +Q + +++L+DE+QDTN QY +KL+ G + A Sbjct: 186 FAELLLRTYELLSRNQPLREHYQSRFKHILVDEFQDTNNLQYNWLKLMA---GTQGAVFA 242 Query: 246 VGDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVISNNPKLFD 305 VGDDDQ+IYA+RGA + N+ +F +LIKLEQNYRS IL AN +I+NN K Sbjct: 243 VGDDDQSIYAFRGANVGNMSAFEREFKVENLIKLEQNYRSHGHILDTANTLIANNTKRLG 302 Query: 306 KTLWSEHGLGDPITVMAMDDEEAEADQIAITLSAHRFERRAKFADYAILYRGNHQARILE 365 K L ++ G G+ + + + EA I I + ++ A+LYR N Q+R++E Sbjct: 303 KNLHTDAGHGEQVRIFESTSDLQEAQWI-IEETKSLIAEGGTRSEIAVLYRSNAQSRVIE 361 Query: 366 KSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVGQATLE 425 +L IPY + GGQ +F+RAE+K IAYL+L+ N +D AF+R V P RG+G +LE Sbjct: 362 HALFSAGIPYRVYGGQRFFERAEVKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGARSLE 421 Query: 426 VLGTLAGQWQCSLFEAV-YKGG------------LEDKLTDRQLLPLRKFCDFINALESR 472 L A Q+ SL+ AV Y G +E + Q LPL + + Sbjct: 422 QLQDAARQYGISLYAAVPYISGKAGTSLGAFVKLIEGARFETQHLPLPEMVQVVLDASGL 481 Query: 473 ATRPGPSGSGAEAGRVLDDMMEA----INYEFYLYDSFEERAAQARWQNVVDFINWLKER 528 T GA+ L+ ++ A ++ E + +D+ ++ + Sbjct: 482 ITHYQKEKEGADRIENLEQLVSAATLFVSEEGFGHDAPALMGPTSK---------QMAGP 532 Query: 529 ACGGRDG----EGEEKNLLEITQMVALMSM--LEGRDEE----QDAVRMSTLHASKGLEF 578 A +DG + + ++ + A +S LE D + QDA+++ T+H++KGLEF Sbjct: 533 AITTQDGIEVLDADAPLPAVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEF 592 Query: 579 PHVFLVGVEEGILPHKGDPDTPPEAAAARVEEERRLMYVGITRAQRSLHLSWCKRRKRAK 638 VF+ G+EEG+ PH+ + VEEERRLMYV ITRA+R L++S+ + R Sbjct: 593 DAVFITGLEEGLFPHENS-----QKEEGGVEEERRLMYVAITRAKRRLYISFSQTRMLHG 647 Query: 639 EVIECQISRFVKEMRLDEGEAVPQESEKITPQAR 672 ++ SRF EM D ++ S K+ P A Sbjct: 648 QMRYNMKSRFFDEMPED---SLKWLSPKVHPPAH 678 >gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 975 Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 176/708 (24%), Positives = 281/708 (39%), Gaps = 119/708 (16%) Query: 9 NKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEM 68 N Q EA+ GP L++AG GSGKT + ++I +LI N G ++ +TFT+KAA E+ Sbjct: 17 NAQQIEAILATDGPVLIIAGPGSGKTFTLVERIVYLITNKGIAPESLFVVTFTDKAAREL 76 Query: 69 QERIAKLLKD---PKQAKHLTVSTFHSLGVKILRQESKHLGLKDRFSIMDS-DDCFSLVQ 124 RI+ L + + + TFHS+ +++L + LK F++ D D + L Q Sbjct: 77 TTRISNRLAELGIQFNLNEMYLGTFHSICLRLLEDYREFTRLKRSFTLFDQFDQQYFLYQ 136 Query: 125 -----------ELAVTTDKAIIRGIQNSISLWKNGLVDPDLAEKNARTEDEAQA---ARI 170 +L + D+ ++ W N + + L E + A Sbjct: 137 RIKDFRELPDAQLVIGDDQTGRWAQSENLLKWLNKVSEEALDAATLAAAPEPEIRALATC 196 Query: 171 YRSYVATLKAYQAVDFDDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELV 230 + Y L + ++DF + ++L EV + + KL +L++DEYQDTNT Q ++ Sbjct: 197 FAKYQELLHEHNSLDFSGIQYEALQLLEKRPEVLAQLRGKLTHLMVDEYQDTNTIQERIL 256 Query: 231 KLLVTGVGKKPMFTAVGDDDQAIYAWRGATIENLKLLGVDFPNLH------LIKLEQNYR 284 LL G++ VGDDDQ +Y +RGATI N+ ++FP L +KL NYR Sbjct: 257 LLL---AGERCNLCVVGDDDQGLYRFRGATIRNI----LEFPALFDDGQCKQVKLTVNYR 309 Query: 285 SSTRILQAAN-----AVISNNPKLF---DKTLWSEHGLGD---PITVMAMDDEEAEADQI 333 S I++ N V + ++F + + E D + + A DD++ + Sbjct: 310 SHPDIIRFYNEWMKEQVWDDGTRVFRFAKQIVPREDEFPDLPAAVRLAASDDKDDTTNWH 369 Query: 334 AITLS-AHRFERRAKFADY---AILYRG--NHQARILEKSLRRERIPYVMSGGQSYFDRA 387 A L+ + + + AD+ A LYR N + L + L + +P +F+R Sbjct: 370 AEVLAFLNGLKASGQLADWNQVAFLYRSVKNDKVVALARFLEAQGVPVFSPRSNMFFERE 429 Query: 388 EIKDIIAYLRLIANQDDDP-AFIRAVTTP-----------------RRGVGQATLEVLGT 429 EI+ +I L + Q A+ VT P R+ + L+ Sbjct: 430 EIRLMIGALIFLFPQFPKVRAWTEGVTLPIWDYYDHQCFKPFIDELRKPENKPLLDWARP 489 Query: 430 LA------GQWQCSLFEAVYKGGLEDKLTDRQLLPLRKFCDFINALESRATRPGPSGSGA 483 LA GQ F ++ QLL F F+ + G + Sbjct: 490 LAKRHAVLGQNTDYSFSGLF----------YQLLQFPLFSRFLAEDAVQGVDKGRAARNL 539 Query: 484 EAGRVLDDMMEAINYEFYLYDSFEERAAQARWQNVVDFINWLKERACGGRDGEGEEKNLL 543 L E ++Y L F E+ N+ D N G GE E+ Sbjct: 540 GTFSKLLTKFEYLHYVSVLNPEFLEK-------NLRDLFNQFMRFLVDGGIGEYED---- 588 Query: 544 EITQMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTPPEA 603 E + V T+H SKGLEFP V +E D E Sbjct: 589 ------------EAEYAPKGCVSFLTIHQSKGLEFPVVVCGSLEAVPRKQYSALDVLLED 636 Query: 604 AAARVEEER-------------RLMYVGITRAQRSLHLSWCKRRKRAK 638 + +ER RL Y +RAQ L L+ +++ R + Sbjct: 637 GGY-LSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQGRGR 683 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] Length = 1096 Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 138/552 (25%), Positives = 212/552 (38%), Gaps = 125/552 (22%) Query: 170 IYRSYVATLKAYQAV-------DFDDLIRLPVELFRSNEE----VRDRWQRKLRYLLIDE 218 ++ A L+ YQAV DF DL L +NEE ++ R + R++L+DE Sbjct: 362 LFTVGAAYLETYQAVKAEQRVFDFADLEWQAYRLL-TNEEHAAYLQSRLDARYRHVLLDE 420 Query: 219 YQDTNTCQYELVKLLVTGVGK---KPMFTAVGDDDQAIYAWR-------GATIENLKLLG 268 +QDTN Q+ +V+ + G KP VGD Q+IY +R A E L G Sbjct: 421 FQDTNPLQWSIVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAAKETLVAQG 480 Query: 269 VDFPNLHLIKLEQNYRSSTRILQAANAVISNNPKLF-----------------------D 305 DF ++ Q R++ I+ NA NP + Sbjct: 481 ADF-----LRTNQTRRNAAGIVDVLNASFVANPIYQPQTTLEQSPGAVWQLPLVQQDKQE 535 Query: 306 KTLWSEHGLGDPITVMAMDDEEA----EADQIAITLSAHRFERRA-KFADYAILYRGNHQ 360 K +WS L DP+T ++E+A E +A+ + R E ++ +++D +L + Sbjct: 536 KVVWSPVQLRDPLTTPREEEEDARRLEEGRAVALAILQARKELKSERWSDVMLLVKKRTH 595 Query: 361 ARILEKSLRRERIPYVMSGGQSYFDRAEIKDIIAYLRLIANQDDDPAFIRAVTTPRRGVG 420 R E++LR IP+ + E+ D+IA L + D+ A + +P G Sbjct: 596 LRAYERALREAGIPFASDKRGGLLESLEVADLIALLNFLITPHDNLALAHVLKSPIMAAG 655 Query: 421 QATLEVLGTLAGQ-WQCSLFEAVYK----------GGLEDKLTDRQLLPLRKFCDFINAL 469 L L + W L V + G LE L LP+ D I Sbjct: 656 DDELIALAERREKTWWLRLQAEVTELSSPALLRAAGLLEKWLHLAPRLPVHDLLDRILHE 715 Query: 470 ESRATRPGPSGSGAEAGRVLDDMMEAINYEFYLYDSFEERAAQ---ARWQNVVDFINWLK 526 R + S G+VL ++ ++F E A R+ ++ FI+ L+ Sbjct: 716 GDVVARYAQTASPLVRGQVLGNI-----------EAFTELALNLDAGRYPSLPKFIDALR 764 Query: 527 ERACGGRDGEGEEKNLLEITQMVALMSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGV 586 +E ++ D DAVR+ T+H +KGLE P V L+ Sbjct: 765 RLQKSADSDAPDEADI----------------DAALDAVRILTIHGAKGLEAPIVVLLDA 808 Query: 587 EE--------GIL-PHKGDPDTP---------PEAAAAR----VEEER-------RLMYV 617 G+L D D P E AAR EEE+ L+YV Sbjct: 809 NHSDGARDDVGVLCAWPQDRDAPTHFSVFGRQAERGAARDTLFAEEEQLKQQEDWNLLYV 868 Query: 618 GITRAQRSLHLS 629 TRA+ L +S Sbjct: 869 ATTRAKNLLIVS 880 >gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans] Length = 588 Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 10/292 (3%) Query: 9 NKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEM 68 P A + G C+VLAG GSGKT+ + K+A ++ R +A +T++ + A E+ Sbjct: 3 GNPGQLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYSQECAREL 62 Query: 69 QERIAKLLKDPKQAKHLTVSTFHSLGVK-ILRQESKHLGLKDRFSIMDSDDCFSLVQELA 127 RI L +QA +L + T H ++ +L + GL F + + S L Sbjct: 63 ARRIENL--GLQQAPNLFIGTVHGFCLRHLLMPYGRLAGLPISFPLSVATQRVS--DRLL 118 Query: 128 VTTDKAIIRGIQNSISLWKNGLVDPDLAEKNART-EDEAQAARIYRSYVATLKAYQAVDF 186 T A+ G + + G + +N+ E + A +Y A L+ +D+ Sbjct: 119 KQTGDALF-GQNHPYKVIDLGRHRRSVLNRNSVAWRSEEELAAWAEAYEAALRDEGLIDY 177 Query: 187 DDLIRLPVELFRSNEEVRDRWQRKLRYLLIDEYQDTNTCQYELVKLLVTGVGKKPMFTAV 246 DD++ L ++ V Q K L +DEYQD + +VK L G + AV Sbjct: 178 DDMVVFGQRLIAEHDWVLPLVQAKFPVLAVDEYQDLGVALHRIVKRLAFDGGVR--LFAV 235 Query: 247 GDDDQAIYAWRGATIENLKLLGVDFPNLHLIKLEQNYRSSTRILQAANAVIS 298 GD DQ+IY + GA L L ++ ++L+ NYRS I+ A+ + Sbjct: 236 GDADQSIYGFTGADGALLMELAAR-RDIEPVQLQLNYRSGAGIVTASEMALG 286 Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 7/79 (8%) Query: 552 MSMLEGRDEEQDAVRMSTLHASKGLEFPHVFLVGVEEGILPHKGDPDTPPEAAAARVEEE 611 ++ L GRD D + + TLH++KG E+ V +VG++ G LP + + PE ++ E Sbjct: 486 ITSLGGRDGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWR---NETPE----KLRES 538 Query: 612 RRLMYVGITRAQRSLHLSW 630 RRL YVG+TRA+ +H+ + Sbjct: 539 RRLFYVGLTRARDEVHMLY 557 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,257,509 Number of extensions: 50036 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 7 Length of query: 690 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 602 Effective length of database: 710,387 Effective search space: 427652974 Effective search space used: 427652974 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)