BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4164.p
         (533 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase s...   817   0.0  
gi|134094251|ref|YP_001099326.1| thioredoxin reductase, FAD/NAD(...   161   7e-41

>gi|134093318|ref|YP_001098393.1| alkyl hydroperoxide reductase
           subunit F [Herminiimonas arsenicoxydans]
          Length = 531

 Score =  817 bits (2110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/534 (76%), Positives = 469/534 (87%), Gaps = 4/534 (0%)

Query: 1   MLDANLKTQLKAYLEKVSHPIEIVASLDDGAKSREMQELLQEIVLLSDRISLVEHRGTSK 60
           MLDANLKTQL AYLEK+  PIEIVASLD   KSRE+QELLQEIV+L+D+I+LVE   T  
Sbjct: 1   MLDANLKTQLAAYLEKIVQPIEIVASLDGSDKSRELQELLQEIVVLTDKITLVER--TDD 58

Query: 61  DARTPSFKLHRPGTNISVEFAAIPMGHEFTSLVLALLQVGGHPIKLDDKVIEQIRNLDGD 120
           D R PSF + RP  +  ++FAAIP+GHEFTSLVLALLQ GGHP+KL+D VIEQIRNLDGD
Sbjct: 59  DERKPSFIIKRPDAHAGIQFAAIPLGHEFTSLVLALLQTGGHPLKLEDSVIEQIRNLDGD 118

Query: 121 YRFETYVSLTCQNCPEVVQALNVMSIINPRIQSVTIDGALFQGEVEQRQIMAVPTVYMNG 180
           Y FETY+SL+C NCPEVVQA NVM++INPRI++VTIDG LFQ EV++R IMAVPT ++NG
Sbjct: 119 YTFETYMSLSCHNCPEVVQAFNVMALINPRIRAVTIDGGLFQDEVKERDIMAVPTTFLNG 178

Query: 181 EVFGQGRTGVEEILAKLDTGAAARKGEELSAQAPYDVLIVGGGPAGAAAAIYAARKGIRT 240
           + F  GR  +E+ILAKLDTG   RK EELSA+APYDVLIVGGGPAGAAAAIYAARKGIRT
Sbjct: 179 QPFESGRVSIEQILAKLDTGGNKRKQEELSAKAPYDVLIVGGGPAGAAAAIYAARKGIRT 238

Query: 241 GVVAERFGGQVLDTLAIENFVSVQETEGPQFATALEQHVRAYDVDIMNVQRAEALVPGDK 300
           GVVAERFGGQVLDTL+IENFVSVQET+GP+FA ALEQHVR+YDVDIMNVQ+A  LVPG K
Sbjct: 239 GVVAERFGGQVLDTLSIENFVSVQETDGPKFAVALEQHVRSYDVDIMNVQQASELVPG-K 297

Query: 301 LIEVKLANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVI 360
           LIE+KL +GG LKGKTVIL+TGARWR ++VPGE EY+NKGVAYCPHCDGPLFKGKRV+VI
Sbjct: 298 LIEIKLKDGGSLKGKTVILATGARWRTIDVPGENEYRNKGVAYCPHCDGPLFKGKRVAVI 357

Query: 361 GGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLKSLPNVTIVTSAQTTEITGDG 420
           GGGNSGVEAAIDLAGIV HVTLIEF AEL+ADAVL RKL+S+PNVT++TSAQTTEITGDG
Sbjct: 358 GGGNSGVEAAIDLAGIVGHVTLIEFGAELRADAVLQRKLRSMPNVTVITSAQTTEITGDG 417

Query: 421 QRVNGISYKERDTGEIKHVALEGVFVQIGLVPNTEWLKGTLALSKHGEIEIDAKGQTSIP 480
           +RVNG+ YK+R T E+K V LEGVF+QIGLVPNTEWLKGT+ALS+HGEIE+DA+GQTS+P
Sbjct: 418 KRVNGLVYKDRKTEEVKTVELEGVFIQIGLVPNTEWLKGTVALSRHGEIEVDARGQTSVP 477

Query: 481 GVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHLIRS-SADDVAPAATKEAVAA 533
           GVFAAGDVTTVPYKQIVIAVG G+ AALSAFDHLIR+   D+   A   EA+ A
Sbjct: 478 GVFAAGDVTTVPYKQIVIAVGEGSKAALSAFDHLIRTPDTDEEVVAIQGEAIPA 531


>gi|134094251|ref|YP_001099326.1| thioredoxin reductase,
           FAD/NAD(P)-binding [Herminiimonas arsenicoxydans]
          Length = 317

 Score =  161 bits (407), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 168/314 (53%), Gaps = 25/314 (7%)

Query: 217 VLIVGGGPAGAAAAIYAARKGIR----TGVVAERFGGQVLDTLAIENF----VSVQETEG 268
           VLI+G GPAG +AA+YAAR  ++    TGV     GGQ++ T  +EN+    + VQ   G
Sbjct: 9   VLILGSGPAGYSAAVYAARANLKPVLITGV---EQGGQLMTTTDVENWPGDPLGVQ---G 62

Query: 269 PQFATALEQHVRAYDVDIMNVQRAEALVPGDKLIEVKLANGGVLKGKTVILSTGARWRNV 328
           P+    L QH   ++ +I+           +K I + + + G     ++I++TGA  + +
Sbjct: 63  PELMQRLLQHAERFNTEII-FDHIHTTKLDEKPIRL-IGDMGEYTCDSLIIATGASAQYL 120

Query: 329 NVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVIGGGNSGVEAAIDLAGIVAHVTLIEFAAE 388
            +P EQ Y  KGV+ C  CDG  ++ + V+VIGGGN+ VE A+ L+ I   VTL+    +
Sbjct: 121 GLPSEQAYMGKGVSACATCDGFFYREQEVAVIGGGNTAVEEALYLSNIATKVTLVHRRDK 180

Query: 389 LKADAVLVRKLKSL---PNVTIVTSAQTTEITGDGQRVNGISYKERDTGEIKHVALEGVF 445
            +A+A+L+ +L +      + I  +    EITGD   V GI+ +      I  + L GVF
Sbjct: 181 FRAEAILIDRLMAKVAEGKIEIKYNHTLDEITGDDSGVTGINIRSTTDDSITAIKLHGVF 240

Query: 446 VQIGLVPNTEWLKGTLALSKHGEIEIDA-----KGQTSIPGVFAAGDVTTVPYKQIVIAV 500
           + IG  PNT   +G L +  +G I+           TS+PGVFAAGDV    Y+Q V + 
Sbjct: 241 IAIGHKPNTSIFEGQLDM-HNGYIKTKTGLEGMATSTSVPGVFAAGDVQDHIYRQAVTSA 299

Query: 501 GAGATAALSAFDHL 514
           G G  AAL A  +L
Sbjct: 300 GTGCMAALDAQRYL 313


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 912,865
Number of extensions: 36770
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 533
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 447
Effective length of database: 716,977
Effective search space: 320488719
Effective search space used: 320488719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)