BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4163.p
         (384 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypepti...   524   e-150
gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidas...    62   5e-11

>gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine
           carboxypeptidase [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  524 bits (1349), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/382 (68%), Positives = 316/382 (82%), Gaps = 4/382 (1%)

Query: 1   MKKLLAALAATVLSFSALTASAQTLPPPTVAAKSWLLLDASANQVIASSEPDMRVEPASL 60
           MKKL AALA  VLS S  TA AQ +P PT+AAKSWLLLDA++NQ++AS+E D+R+EPASL
Sbjct: 1   MKKLFAALAVAVLSLS--TAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASL 58

Query: 61  TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120
           TKLMTAY+AF+A++DKR++L Q + VS NAWKVDP SSKMFIEP  PVS+++LLYGLI  
Sbjct: 59  TKLMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQ 118

Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180
           SGNDAAVA+AEAV+GTEDAF  LMNREA+R G+ +T F+NPHGLPSP+ Y+TARDL++L 
Sbjct: 119 SGNDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLA 178

Query: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240
            +L++D PE+YK  YS K FTYN I Q NRNRLLWLDPTVDGMKTG+T +AGY LI++A 
Sbjct: 179 THLVSDHPEFYK-IYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAK 237

Query: 241 RPVPNGERRLISVVIGTVSDAVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGSQ 300
           RP    ERRLISVVIGT SD  R QESQKLLNWGFQNFDAVKLY+K   +DTP+VWKGSQ
Sbjct: 238 RPNGANERRLISVVIGTASDQARAQESQKLLNWGFQNFDAVKLYSKDVAIDTPNVWKGSQ 297

Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPISENAKVGTLKV-TIDDKTVAELP 359
           +KIK+GF  DV++T+PKG A K+K  L R DPL+API +N+ VGT+KV + ++K +AELP
Sbjct: 298 NKIKIGFTRDVFVTVPKGMAGKIKPVLARKDPLVAPIDKNSPVGTVKVMSAENKVIAELP 357

Query: 360 VVALESVGPAGFLGRAWDSLRL 381
           V+ALE VGPAG  GRA DS+RL
Sbjct: 358 VLALEQVGPAGMFGRALDSIRL 379


>gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score = 62.0 bits (149), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 22/225 (9%)

Query: 30  VAAKSWLLLDASANQVIASSEPDMRVEPASLTKLMTAYLAFAALRDKRLSLEQEVNVSVN 89
           +A+   L++D S ++V+     ++ +  AS+TKLMT  +   A +D    LE      V 
Sbjct: 146 LASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEMLE------VT 199

Query: 90  AWKVDP---SSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEAVSGTEDAFVQLMNR 146
           A  +D    SSS++ +     +S  N+L+  +  S N AA A+     G   AFV  MN 
Sbjct: 200 AEDIDREKNSSSRLRV--GSQLSRANMLHIALMSSENRAASALGRHYPGGLRAFVATMNA 257

Query: 147 EAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILCRNLINDFPEYYKRYYSVKKFTYN--- 203
           +A+  G+  TH+ +  GL S +   +ARDL+ L     N      ++Y +  K+      
Sbjct: 258 KAKSLGMRGTHYVDSTGL-SSNNVASARDLAKLVVEAYNH--PILRQYSTDSKYVVEPGG 314

Query: 204 -NITQPNRNRLLWL-DPTVDGMKTGHTSSAGYSLITSAH---RPV 243
             +   N NRL+   D  +   KTG+ S AG  L+   +   RP+
Sbjct: 315 RALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPI 359


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 682,943
Number of extensions: 26727
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 301
Effective length of database: 726,862
Effective search space: 218785462
Effective search space used: 218785462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)