BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4162.p
         (220 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096154|ref|YP_001101229.1| hypothetical protein HEAR2998 [...   288   1e-79

>gi|134096154|ref|YP_001101229.1| hypothetical protein HEAR2998
           [Herminiimonas arsenicoxydans]
          Length = 207

 Score =  288 bits (738), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/213 (68%), Positives = 163/213 (76%), Gaps = 6/213 (2%)

Query: 1   MNVYTQHFMIPGAVGQLECALDLPDPEQFAAPVGLALVAHPHPLYGGSMDNKVAQTLART 60
           MN  TQ F + GA G LECALDLP       P G+AL+ HPHPL+GG+MDNKV  TLAR 
Sbjct: 1   MNAQTQRFSLQGAAGVLECALDLPA----TTPRGIALIGHPHPLFGGTMDNKVVHTLARA 56

Query: 61  FLALGYVAVRMNFRGVGKSEGVHDHGAGETDDMALLLQHMRTQYPDLPLALGGFSFGTFV 120
           F+AL YVAVRMNFRGVG S G +D GAGETDDMA LL +M+ QYP LP AL GFSFGTFV
Sbjct: 57  FVALDYVAVRMNFRGVGASGGAYDEGAGETDDMAQLLTYMQQQYPALPFALAGFSFGTFV 116

Query: 121 QAQLQQRLLQQDAATAAERLVLVGTAAGKWPMPPAPANTILIHGEQDDTIPLSAVLDWAR 180
           Q QLQ+RL +Q   T AERLVLVG+A GKWP+   PA+TILIHGE D+TIPL  V DWAR
Sbjct: 117 QTQLQKRLEEQ--GTPAERLVLVGSAPGKWPLQTVPADTILIHGELDETIPLIDVFDWAR 174

Query: 181 PQELPVVVIPGSDHFFHRKLQHIKNVVVESWHR 213
           PQ+LPVVV+PG+DHFF RKL HIKN VV  W R
Sbjct: 175 PQDLPVVVVPGADHFFGRKLHHIKNHVVAMWRR 207


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 448,408
Number of extensions: 17895
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 142
Effective length of database: 743,337
Effective search space: 105553854
Effective search space used: 105553854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)