BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4160.p
         (383 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096152|ref|YP_001101227.1| hypothetical protein HEAR2996 [...   327   7e-91

>gi|134096152|ref|YP_001101227.1| hypothetical protein HEAR2996
           [Herminiimonas arsenicoxydans]
          Length = 383

 Score =  327 bits (837), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 179/341 (52%), Positives = 240/341 (70%)

Query: 40  SWYPFSGWRDIGIKPFDYLGARLPYYWTGFDVWTNVAGYAPLGLLLVLSLYPLLRPWWAV 99
           S YPF+GW+ +G+    YL A +P YWTGFDV TN+ GY PLG+L V +L+P +R   A+
Sbjct: 39  SLYPFTGWQSMGLPLQTYLFAGMPRYWTGFDVVTNILGYIPLGILTVFALHPKIRRTGAI 98

Query: 100 WPAALAGVLLSACMEAVQTYLPTRVPSNLDLLTNSIGVTLGALLGAACSRYFLQESRFLL 159
               L GV+LS  MEA QT LP RV SNLD +TNS+G  +GA++G+  S   L+ SR   
Sbjct: 99  VLTLLLGVVLSGAMEATQTLLPNRVASNLDFITNSMGTLIGAVIGSISSHLVLERSRLRH 158

Query: 160 LRRRWFSSQASRGLVVAGLWPLALIYPQNHLFGLGHLVPPVSAFFSDLLDTPIDLATTWL 219
           LR +W ++QASRGL++  LWP+A IYPQ++LFG G ++P +S + S LL+TP+DL +   
Sbjct: 159 LRHQWLTAQASRGLIIFALWPMAQIYPQSYLFGNGQILPILSDWLSILLETPVDLGSLLR 218

Query: 220 NSAQLSAEQYWLADVIVTACGLTGAALLMLLLLGRQAPRRRLVTLYLLGCIAAKSLACAL 279
           N  QLS EQYWLA+ I+TA  ++G  L +L +L  +APR  LV + L   +A K+LA AL
Sbjct: 219 NGVQLSVEQYWLAEAIITALNVSGVLLALLCMLREKAPRAILVLVLLSAALAVKTLATAL 278

Query: 280 FFAPQNAFVWISPSAVGGIMLGTMMIAGLTWAPPAAQRRVAALALILALVVTNAVPANPY 339
            F P NAF W++P A GG++LG  +++GL + P +AQRR A   LILA +  N  PANPY
Sbjct: 279 LFTPANAFAWLTPGAQGGVLLGLCLLSGLAFLPSSAQRRTAIGLLILAFIAVNLAPANPY 338

Query: 340 YLSTLETWVQGKFLNFDGAAQFLSVLWPFLAIWFLLHPVHR 380
           +++TLETW+QGKFLNF+GAAQFLS+LWP  A+WFLLH  HR
Sbjct: 339 FIATLETWMQGKFLNFNGAAQFLSLLWPVAALWFLLHATHR 379


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.140    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,382
Number of extensions: 19398
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 300
Effective length of database: 726,862
Effective search space: 218058600
Effective search space used: 218058600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)