BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4159.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096147|ref|YP_001101222.1| bifunctional biotin-[acetylCoA ...   223   1e-59

>gi|134096147|ref|YP_001101222.1| bifunctional biotin-[acetylCoA
           carboxylase] holoenzyme synthetase/transcriptional
           repressor [Herminiimonas arsenicoxydans]
          Length = 263

 Score =  223 bits (567), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 3/245 (1%)

Query: 12  QRIDVEAVAQTGSTNIDLMQRLSSLQRPLLLVADRQTAGRGRAGRPWRAQPQDSLTFSLA 71
           Q + +  V +TGSTN DL+   + LQ P LL A  QTAG+GRAGR W +    +LTFSLA
Sbjct: 21  QNMTLRIVTETGSTNADLLAETTQLQGPTLLWAGVQTAGKGRAGRRWHSAADATLTFSLA 80

Query: 72  WRLQRPTHALLGLPLAVGVALAEALEVFGIRPQLKWPNDVLRDGAKLAGILIETAAEGGR 131
           W+   P  AL GL LAVGV + E L  FG+  QLKWPNDVLR+G KLAGILIETA +   
Sbjct: 81  WKFALPVQALAGLSLAVGVTVVETLISFGVDAQLKWPNDVLRNGNKLAGILIETAMDKTD 140

Query: 132 ADATWAVIGIGLNLGVPSGLEDELQRAVGSAPELQKPPRETVLAIIVSALSEVLTEFEQR 191
             + WA+IG+G+NL     L  ++ R V  A  L+   R  ++A ++ A S+ L  FEQ+
Sbjct: 141 RQSIWAIIGVGINLADARNLSAQIGRTVADASGLE---RVRLMAALLDAFSKALPLFEQQ 197

Query: 192 GFGAFVKRWETFHAYAGQSVKIVDNGRVVHEGIALGVDMMGRFLIDTEAGQIEVLAGDVS 251
           GF AF   W    AYAGQ+V I+D  +++  G A GVD  GR L+DT  G+I + AGDVS
Sbjct: 198 GFKAFAPAWNALDAYAGQAVNILDQEKILQHGDAAGVDEAGRLLLDTAQGRIAISAGDVS 257

Query: 252 LRLQD 256
           LR+++
Sbjct: 258 LRIRE 262


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 420,177
Number of extensions: 15800
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)