BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4158.p
         (260 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096146|ref|YP_001101221.1| accessory factor Bvg [Herminiim...   234   2e-63

>gi|134096146|ref|YP_001101221.1| accessory factor Bvg
           [Herminiimonas arsenicoxydans]
          Length = 258

 Score =  234 bits (598), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/256 (51%), Positives = 167/256 (65%), Gaps = 10/256 (3%)

Query: 1   MLLVDAGNTRIKWAVPDPAA--PALGCWRQQGAVDRADFSALVPQWAGLARSGSDLQVCI 58
           +LLVDAGNTRIKW + D ++     G W   G+  RA+ + L   W+  + S    +V +
Sbjct: 2   LLLVDAGNTRIKWVLVDCSSGQQTPGSWHVAGSAARAETAQLAQAWSSFSIS----RVLL 57

Query: 59  SNVAGAALHESLQAILLQVFGPRVIVQWFASTPQRAGLRNGYRHPGQLGCDRFAAAIGAR 118
           SNVAGA L E L+  +L   G  + ++WFASTP   G+RN Y +P QLG DRFAAAIGA 
Sbjct: 58  SNVAGAELREELERAVLHAAG-DIELEWFASTPAAGGVRNHYLNPAQLGSDRFAAAIGAH 116

Query: 119 ALFAGEDLLVATCGTATTIDVVSAEGVFEGGMILPGFGTMATSLALNTAQLPRIDGAAPP 178
            LF    L+VATCGTATTID V+A+G F GGMILPG   MA++LA NTAQLP +   A  
Sbjct: 117 VLFPNRPLVVATCGTATTIDAVNADGAFVGGMILPGLALMASALANNTAQLPEVALHASS 176

Query: 179 ERVFADNTVEAIVSGCIAAQVGAIEHALAERRRQRPQASLRCLLAGGAGLLLAPYLALGE 238
            + FADNT  AIVSGC+AAQ GAIE A+       PQ  L C+LAGGA  L+AP+L++  
Sbjct: 177 TQPFADNTDAAIVSGCLAAQAGAIERAVKAHAAAHPQGELYCILAGGAADLIAPHLSIA- 235

Query: 239 TPLEKVDNLVLIGLQV 254
              ++VDNLVLIGL  
Sbjct: 236 --YKRVDNLVLIGLHT 249


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 448,429
Number of extensions: 15848
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 180
Effective length of database: 736,747
Effective search space: 132614460
Effective search space used: 132614460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)