BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4157.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096145|ref|YP_001101220.1| hypothetical protein HEAR2989 [...   176   1e-45

>gi|134096145|ref|YP_001101220.1| hypothetical protein HEAR2989
           [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  176 bits (445), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/265 (39%), Positives = 154/265 (58%), Gaps = 21/265 (7%)

Query: 3   LKLLFWLLLAGNVVLFGLTRGYFGASATERREPQRLAQQLHPELLSVLPANSEKLASQLR 62
           LK+LF  LL  N  L+   +G+  A +   REP RLAQQL+P  L ++PA + + A+   
Sbjct: 2   LKILFGFLLLINGGLYAFQQGWLDAWSPASREPSRLAQQLNPAQLKLIPAPAARPAAVAP 61

Query: 63  AQPSTAQV-ASADATATAPAAAATLTPATSTTSTTATQPAPTAATQTVAVTPSCTEVGNF 121
           +  + + V A A AT   P A   +  A   ++  A                 CTEVGNF
Sbjct: 62  SAVAPSAVNALAAATPEEPEAEKNMARADKISNVLA-----------------CTEVGNF 104

Query: 122 TAADARRFSEQLASLNLGDKVVQKLTQDVTSHMVYIAPEGGREGADRRVAELRRLGIGDF 181
            A +A+RF  QLASL LG+++ ++  Q+   HMVYI P+  ++ A+++  EL+RLG+ DF
Sbjct: 105 DAVEAKRFETQLASLALGERLTRRTIQEHARHMVYIPPQASKDAAEKKAGELKRLGVEDF 164

Query: 182 YVIPDSFPNPALRYGVSLGIFRTEEAAKAYVGQLISRGVRSARIIARRSGAGKQVFQLRD 241
           +VI D     AL++G+SLGIF++EEAA+ ++  L  +GVRSARI      A K  FQLR 
Sbjct: 165 FVIQDG---SALQWGISLGIFKSEEAARNHLNALNQKGVRSARIGTHSPSANKVAFQLRG 221

Query: 242 LTPEARTALENIKSAFPDQEIRACS 266
           L   A+ ++  IK +FP QE+R C+
Sbjct: 222 LDTAAKNSVVKIKGSFPRQELRECA 246


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 338,222
Number of extensions: 10782
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)