BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4156.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096144|ref|YP_001101219.1| acetylglutamate kinase [Hermini...   559   e-161
gi|134094309|ref|YP_001099384.1| N-acetylglutamate synthase [Her...   104   5e-24

>gi|134096144|ref|YP_001101219.1| acetylglutamate kinase
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  559 bits (1440), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/297 (92%), Positives = 285/297 (95%)

Query: 1   MTTDLTHVAPQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLV 60
           M  DLT V+PQI+A+ILAEALPYIRKFHGKTIVVKYGGNAMTEE LKH FARDVILLKLV
Sbjct: 1   MNADLTVVSPQIQAQILAEALPYIRKFHGKTIVVKYGGNAMTEERLKHSFARDVILLKLV 60

Query: 61  GMNPVVVHGGGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH 120
           GMNPVVVHGGGPQID ALKKIGKQGTF+QGMRITDEETMEVVEWVLGGEVQQDIVMLINH
Sbjct: 61  GMNPVVVHGGGPQIDNALKKIGKQGTFIQGMRITDEETMEVVEWVLGGEVQQDIVMLINH 120

Query: 121 YGGQAVGLTGKDGGLIRARKMQMPDKEHPGAYLDIGYVGEIEAINPAVVKALQDDAFIPI 180
           YGGQAVGLTGKDGGLIRARKM MPD+E+PG +LDIG+VG+IEAINPAVVKALQDDAFIPI
Sbjct: 121 YGGQAVGLTGKDGGLIRARKMNMPDRENPGKFLDIGFVGDIEAINPAVVKALQDDAFIPI 180

Query: 181 ISPIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGKLLTDLSAREIDE 240
           ISPIGFGDDGQAYNINADVVAGKIAEIL AEKLIMMTNIAGVQDK G LLTDLSAREIDE
Sbjct: 181 ISPIGFGDDGQAYNINADVVAGKIAEILRAEKLIMMTNIAGVQDKQGNLLTDLSAREIDE 240

Query: 241 MFADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH 297
           MF DGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH
Sbjct: 241 MFEDGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMIRSH 297


>gi|134094309|ref|YP_001099384.1| N-acetylglutamate synthase
           [Herminiimonas arsenicoxydans]
          Length = 436

 Score =  104 bits (260), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 135/293 (46%), Gaps = 20/293 (6%)

Query: 10  PQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHG 69
           P+   + L    PYI  F GKT VV + G  +   +L    A+D+ LL  +G+  V+V+G
Sbjct: 4   PEQFVQWLRSVAPYIHAFRGKTFVVAFPGELVIAGALP-VLAQDLSLLHALGIKVVIVYG 62

Query: 70  GGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVM-----LINHYGGQ 124
             PQ++  L     Q  F  G+RITD   +E  +    GE++ DI       L N     
Sbjct: 63  SRPQVEEQLALRNVQARFHNGLRITDVAALECAKEA-AGELRLDIEAAFSQGLPNTPMAH 121

Query: 125 AVGLTGKDGGLIRARKMQMPDK---EHPGAYLDIGYVGEIEAINPAVVKALQDDAFIPII 181
           A  +    G  + AR + + D    E  G    I Y    EAI+P +         + ++
Sbjct: 122 A-AIRIISGNFVTARPLGIVDGVDLELTGVTRKIAY----EAIHPILAAG-----GLVLL 171

Query: 182 SPIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGKLLTDLSAREIDEM 241
           SP+GF   G+ +N+  + VA   A+ L A+KLI +T    + DK G  + +LS+ ++D +
Sbjct: 172 SPLGFSPTGEVFNLTMEDVAVSAAKALRADKLIFITETPMMIDKTGAEIHELSSHQVDAV 231

Query: 242 FADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 294
                +       +  A+ A   GV   HII    + S LLE+ T    GTM+
Sbjct: 232 LNYDCVPADSAFYLEHAVQACNGGVPRAHIIPFATDGSALLELFTHDGVGTMV 284


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 612,698
Number of extensions: 27196
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)