BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4155.p
         (306 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096142|ref|YP_001101217.1| hypothetical protein HEAR2986 [...   207   7e-55

>gi|134096142|ref|YP_001101217.1| hypothetical protein HEAR2986
           [Herminiimonas arsenicoxydans]
          Length = 310

 Score =  207 bits (526), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 180/310 (58%), Gaps = 4/310 (1%)

Query: 1   MQRLIIVSLT-WLSCFNFLAPARAATTADTV---QPAPPRGALYQVSDGRHTLLLFGTIH 56
           M+R ++   T  LS +   A A   +T   +      P RG LY+ + G +   LFGTIH
Sbjct: 1   MRRYVVFIFTALLSLYTASAYADKISTPSAIVQKHAVPQRGTLYRATYGSNVSYLFGTIH 60

Query: 57  VGAPDFYPLEPRLTRALAAAPVLALELDPANTGAMQSAVQRHGLYPAGEHLLDQLDAPLR 116
           VG   FYPLEP++TRAL+ A  L +E+D  +T AM+ A+ RHG+YP G+ +   L A   
Sbjct: 61  VGQTAFYPLEPQVTRALSDAKKLVIEVDIRDTEAMRLAILRHGIYPDGQTINRHLSADGS 120

Query: 117 ERTESALQGLGMVPASVQQLRPWMLAMVLSVQQYVRHGYRTDLAVDSHLAATVRAHGGKV 176
            +   ALQ  G+   S+ +++PWM+A +L +Q+  RHG+ T+  ++ +  +  +     +
Sbjct: 121 AQLRQALQRAGIPFDSIARMKPWMVANLLLIQEMARHGFPTEQGIEKYFISLAQEQNKPI 180

Query: 177 VELESAERQMAIFSKLGQAQQIQFLADTLQELDDANLTRKLDFLVDAWRHADSAGFANAL 236
            ELE+A+ Q+++F  +  A+Q ++L + L EL + +  +K   L+ AW++AD+    N+L
Sbjct: 181 QELETADYQLSLFDSMTDAEQEEYLKENLAELANGDAMKKALALIAAWQNADAQALENSL 240

Query: 237 KELQEDGSFSSHFTVQALLRERNPGLAAGIAELLQRQDQAVAAIGILHLVGPDSVPVLLG 296
            E+Q+  + S  F    LL +RNP +A  +  LL+    +  A+G LHL+G   VP LL 
Sbjct: 241 LEMQKGETASDRFLQHVLLDQRNPNMANKVEALLKSDKTSFVAVGALHLLGDQGVPSLLQ 300

Query: 297 KRGLQVKQLY 306
           KRG +VK++Y
Sbjct: 301 KRGYEVKRIY 310


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 538,432
Number of extensions: 20036
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 225
Effective length of database: 733,452
Effective search space: 165026700
Effective search space used: 165026700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)