BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4154.p
         (255 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096141|ref|YP_001101216.1| hypothetical protein HEAR2985 [...   236   1e-63

>gi|134096141|ref|YP_001101216.1| hypothetical protein HEAR2985
           [Herminiimonas arsenicoxydans]
          Length = 213

 Score =  236 bits (601), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 120/209 (57%), Positives = 152/209 (72%), Gaps = 2/209 (0%)

Query: 42  MNRIIKRVLDHDGQPSDEAAVNYLRRHYWKLYGATLLGLVRHHGLEVDEFLHEAHLFDDL 101
           MN  I +VL+  G  SDEAAVN  R  YW+ YGATLLG+V HH +  ++FL EAH FDDL
Sbjct: 1   MNAYIAQVLNEAGAVSDEAAVNAARVAYWQRYGATLLGMVNHHQVRPEDFLREAHRFDDL 60

Query: 102 PGMVRAERGIGRWLSQLPGQKILLTNAPRRYSRELVRHLGLQRHFSHHISIESMHVHRQL 161
             M+RAERG+G+ L +LPG+KILLTNAPRRYS E++RHLGL +HF+ H+ IE+M VH +L
Sbjct: 61  ATMIRAERGLGKLLRRLPGRKILLTNAPRRYSHEVLRHLGLHKHFARHVPIEAMRVHGRL 120

Query: 162 RPKPSRLMLRKLLARHKVAPRRCILVEDTVDNLRSARELGVRTAWVTQYLRGSQALLGPI 221
           RPKPS+ MLRKLLA+  +   RC+LVEDTV +L+ A+ LG+RTAWVTQYL    +     
Sbjct: 121 RPKPSKQMLRKLLAKEDIRAGRCVLVEDTVSHLKGAKSLGLRTAWVTQYLAADSSKGAVT 180

Query: 222 GGQRVLSRL--PAYVDVKVRSVRQLPRRL 248
           G    +  +  P YVDVKV+SV QL R+L
Sbjct: 181 GNGATVGHIKRPIYVDVKVKSVGQLFRQL 209


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 496,016
Number of extensions: 20371
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 175
Effective length of database: 736,747
Effective search space: 128930725
Effective search space used: 128930725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)