BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4153.p
         (190 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096116|ref|YP_001101191.1| transcription regulator [Hermin...   199   1e-52

>gi|134096116|ref|YP_001101191.1| transcription regulator
           [Herminiimonas arsenicoxydans]
          Length = 199

 Score =  199 bits (505), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 119/169 (70%), Gaps = 7/169 (4%)

Query: 25  ALAEAQLREAGVRVTQARVNVLGALLETRSAASHQDIQDRFADMDRVTLYRALDCLTEAG 84
           ALAE+QLR+  +R T AR+ VL ALL    A SHQD+QD   DMDRVTLYRALD LT+AG
Sbjct: 33  ALAESQLRDTSLRSTAARIKVLAALLGAPYALSHQDVQDTLVDMDRVTLYRALDALTDAG 92

Query: 85  LAHKISSDDRIFRYSAGADHPEHGLHDHSQGKQHQHGHFKCTRCNRVFCLDASD----GT 140
           LAHKI+ DDR+FRY+AGA+H   G  +    +QHQHGHFKCTRC +VFC+D  D      
Sbjct: 93  LAHKIAGDDRVFRYNAGAEHLAAGSKNQILHQQHQHGHFKCTRCAKVFCIDNIDEKLLAA 152

Query: 141 DFLATVLPEAERHQSTAAQLQSALRKTLGKGFQSHEVELTIKGWCADCA 189
           D    + P A    +   QLQ  L+ TLGKGFQSHE+ELTIKGWCADCA
Sbjct: 153 DTQTQLNPSAV---TLRQQLQKVLQATLGKGFQSHEIELTIKGWCADCA 198


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.129    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 297,140
Number of extensions: 10729
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 113
Effective length of database: 746,632
Effective search space: 84369416
Effective search space used: 84369416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)