BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4152.p
         (336 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herm...   369   e-103
gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombin...   126   2e-30

>gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC
           [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  369 bits (946), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/305 (62%), Positives = 231/305 (75%), Gaps = 11/305 (3%)

Query: 22  LSPHTLENYGRDLQELRALLAPADDHDGVADSTLPHVSQPQIRKCAARLHARGLNARSIS 81
           +SP T+ +Y RDL EL AL   +D      ++ L  +S  QIRK AA+LHA+GLNARSI+
Sbjct: 1   MSPLTITSYRRDLLELLALATASD-----GNAALSAISHFQIRKFAAQLHAKGLNARSIA 55

Query: 82  RKLSAWRGFFAWLALEEGMALPANPVDGVKPPKKSKPLPKALAADDAIRLVSHADPARDP 141
           RKLSAWRGFF WL+  E  A+ +NPVDG+K PK++KPLPKALAADDA+RLVS   P ++ 
Sbjct: 56  RKLSAWRGFFTWLS--EQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNA 113

Query: 142 ASTLAACNRAMFELLYSSGLRVSELVGIDLADVREGRYESAGWIDLAEAEVTVTGKGGKK 201
            +T+  CNRAMFELLYSSGLR SELVG+DL   +E RY SAGWID    E  VTGKG K 
Sbjct: 114 DATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHEAMVTGKGSKM 173

Query: 202 RKVPVGKAALQAIQDWLPLRAGLVRADGGPDGHALFLNERGARMSPRVTQLRLKAHGKGV 261
           R  P+G+ A+ A++ WL +R  L++     D H LFL+ERG R+S RV QLRLKAH + V
Sbjct: 174 RSAPIGQPAIDALKAWLAVRDTLLKL----DPHPLFLSERGTRISARVLQLRLKAHAQAV 229

Query: 262 EMATDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAH 321
            +  DVHPH+LRHSFASHVLQSSGDLRAVQEMLGHASI+ATQ+YT+LDFQRLAQVYD AH
Sbjct: 230 GLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYTSLDFQRLAQVYDAAH 289

Query: 322 PRAHK 326
           PRA K
Sbjct: 290 PRAKK 294


>gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase
           [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 133/248 (53%), Gaps = 19/248 (7%)

Query: 76  NARSISRKLSAWRGFFAWLALEEGMALPANPVDGVKPPKKSKPLPKALAADDAIRLVSHA 135
            A S +R+L+  + F+  LAL +   +  +P   ++  K+   +PK L+      L++  
Sbjct: 80  KATSSNRRLAVLKRFYQ-LALRQN-RISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA-- 135

Query: 136 DPARDPASTLAACNRAMFELLYSSGLRVSELVGIDLADVREGRYESAGWIDLAEAEVTVT 195
             A D  + L   +R M EL+Y+SGLRV+ELV +   +V            + E  + +T
Sbjct: 136 --APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEV-----------GMNEGVLRIT 182

Query: 196 GKGGKKRKVPVGKAALQAIQDWLPLRAGLVRADGGPDGHALFLNERGARMSPRVTQLRLK 255
           GKGGK R VP G+ A   I+ +L     L+  DG  D  ALF+  RGA M+ ++    +K
Sbjct: 183 GKGGKTRLVPFGEEARVWIERYLKEARPLI-LDGQIDD-ALFVTARGAAMTRQMFWTLIK 240

Query: 256 AHGKGVEMATDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQ 315
            H    E+   + PH LRH+FA+H+L    DLR VQ +LGH+ I+ TQ+YT +  +RL  
Sbjct: 241 KHAAAAEINAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKH 300

Query: 316 VYDQAHPR 323
           ++   HPR
Sbjct: 301 LHQIHHPR 308


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 573,598
Number of extensions: 20723
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 254
Effective length of database: 730,157
Effective search space: 185459878
Effective search space used: 185459878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)