BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4150.p (422 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 149 2e-37 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 122 3e-29 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 95 5e-21 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 77 2e-15 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 154/439 (35%), Positives = 195/439 (44%), Gaps = 99/439 (22%) Query: 1 MKKSLLALAVLGAFAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQ 60 MKKSLLALAVLGAFAGAA AQSSVT+YGIVD GIT TG G N V SGN Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDMGITSQD---TGAGANDRLN-GVTSGNQS 56 Query: 61 GSRIGFKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTV 120 SRIGFKG EDLG GL A F LE D G L V G F R + VGLSG FG V Sbjct: 57 ASRIGFKGTEDLGNGLKANFVLEQTIAADTGVLS---QVDGKTAFNRFATVGLSGNFGAV 113 Query: 121 LLGRQTDFADTISAYTSVNDFG---------------GLTGNVGHNLNRLEGTRTNNSIS 165 LGRQ + AY +++ FG L G+ G R +NSI Sbjct: 114 NLGRQV--SAIKDAYDAIDPFGDGGTIAPISAIFFNAALKGDNG---------RISNSIK 162 Query: 166 YTTANLNGFTGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQGTTPSDTA 225 YT+ + +GF Y FGE AG+T A ++GL Y NGPL + Y TA Sbjct: 163 YTSNSYSGFKFGAHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDD-----STA 217 Query: 226 LIQGVAPAASASATALADYTIATGQNSANAGNTALKVFNLVASYQFGPARVYGNWSRVKQ 285 G P N+ K+ L A+Y FG A+++ + K Sbjct: 218 GAPGFKPVK----------------------NSKDKMTFLGATYDFGVAKLHAAYGDSKN 255 Query: 286 DLNTAANVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLK 345 A NV N+ LG++ K +G A S+ S Sbjct: 256 QP-VAGNV---------------------DNKYRNYMLGVSAK-----VGAAGSIMASYT 288 Query: 346 LLAAVEYTTASFDGLNGKGKLTQY-NLGADYWLSKRTDLYA-FVNNLRAKDMKNPGVFGD 403 + T +F G+ + ++ + + LSKRT+LYA + + K+ K + D Sbjct: 289 V-----NDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHTSNDKNAKLNALVAD 343 Query: 404 STGSDASQTAVTVGVRHKF 422 +GS VGVRHKF Sbjct: 344 QSGS-----MFAVGVRHKF 357 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 138/444 (31%), Positives = 197/444 (44%), Gaps = 78/444 (17%) Query: 2 KKSLLALAVLGAFAGAAQ---AQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGN 58 + ++ +A L + G Q AQ+ VTIYGI D + Y+S G +NT + SGN Sbjct: 4 RNFVVLVAALTLYTGVLQNAGAQNGVTIYGIADVAMVYSSN--QGGASNT----YMRSGN 57 Query: 59 IQGSRIGFKGVEDLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSG-GF 117 + GSRIGFKG EDLGGG A+F LE+GF D G + S S LF R++ VG++ + Sbjct: 58 LAGSRIGFKGTEDLGGGTQAIFQLESGFNLDTGEMSSS-----STLFNRQAFVGINNTRY 112 Query: 118 GTVLLGRQ-TDFADTISAYTSVNDFGGLTGNVGHNLNRLEGT-RTNNSISYTTANLNGFT 175 G + GRQ T + + N G TG +++ L+ T R+NNSI+YT+ NG Sbjct: 113 GALTAGRQYTPYYLFVGPIGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQ 172 Query: 176 GNLIYGFGETAGKTSAGQSFGLGAKYD--NGPLGLGANYYQSKQGTTPSDTALIQGVAPA 233 + + GFGETAG +G++ KYD N LG YQ + P Sbjct: 173 VSALAGFGETAGDMGSGRTISAAIKYDINNWNFALG---YQRLNNSN----------NPG 219 Query: 234 ASASATALADYTIATGQNSANAGNTALKVFNLVASYQFGPARVYGNWSRVKQDLNTAANV 293 S A A++ + N + ++A + A Y G V N SRV+ N Sbjct: 220 GVWSPNASANFNTSPVNNGYLSADSA-QYLAGAARYTMGKVIVGANASRVEYRPN----- 273 Query: 294 AALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLKLLAAVEYT 353 G+++ +A TLGL T Y ++P + YT Sbjct: 274 ---------GNSLFT-------QKATFDTLGLL---------TGYQMTPVFFVSVGYSYT 308 Query: 354 TA-SFDGLNGKGKLTQYNLGADYWLSKRTDLYAFVNNLRAK----------DMKNPGVFG 402 + +G++ K Q L Y SKRT +Y AK ++ V G Sbjct: 309 KEKAANGISDPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSGPVRAVAVVG 368 Query: 403 DS---TGSD-ASQTAVTVGVRHKF 422 DS T SD A+Q VG+RH F Sbjct: 369 DSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 95.1 bits (235), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 127/437 (29%), Positives = 179/437 (40%), Gaps = 92/437 (21%) Query: 14 FAGAAQAQSSVTIYGIVDTGITYTSKAATGTGTNTG---SKFAVNSGNIQGSRIGFKGVE 70 F+ A AQSSV G VD A G+ N+G SK VNS ++ S G KG E Sbjct: 22 FSLNALAQSSVQFVGTVD--------AFAGSLKNSGDAGSKSVVNSSGMETSWWGVKGTE 73 Query: 71 DLGGGLSAVFNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTVLLGRQTDFAD 130 +LGGGL A F L + F D G D+ T +F R + VGLSG FG V +GR D A Sbjct: 74 NLGGGLQAQFALSSFFRPDTGAQGRFDSDT---MFSRDAHVGLSGSFGRVSVGR--DLAP 128 Query: 131 TISAYTSVNDFGGLTGNVGHNLNRLE----------------GTRTNNSISYTTANLNGF 174 + + FGG L+ T +N I Y L GF Sbjct: 129 NFIPTLTFSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGF 188 Query: 175 TGNLIYGFGETAGKTSAGQSFGLGAKYDNGPLGLGANYYQSKQGTTPSDT-----ALIQG 229 T +L + FGE AGK ++G Y+ GPL GA Y+QS + P D+ + + Sbjct: 189 TTSLFFQFGEQAGKPGK-NNYGANTMYEQGPLSFGA-YFQSVKVNNPLDSVTSGDSRVFT 246 Query: 230 VAPAASASATALADYTIATGQNSAN--AGNTALKVFNLVASYQFGPARVYGNWSRVKQDL 287 P A+ A YT+A +N G L+ L + + R+ G + + DL Sbjct: 247 FTPYNQATG---ATYTLAASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLIGIANDSQYDL 303 Query: 288 NTAANVAALRSTVATGSTIAVASPLTAANRAAAATLGLATKADIYELGTAYSLSPSLKLL 347 + N L ++V G + S A + D Sbjct: 304 KS--NTVQLGTSVPVGKGSVLFS---------WARTNVKADGDF---------------- 336 Query: 348 AAVEYTTASFDGLNGKGKLTQ--YNLGADYWLSKRTDLYAFVNNLRAKDMKNPGVFGDST 405 +A G GK + + +LG DY+LSKRTD+Y+ V+ + D ST Sbjct: 337 ------SAVLGGAGGKSSIIRNTASLGYDYFLSKRTDVYSVVSYDKLTDQ--------ST 382 Query: 406 GSDASQTAVTVGVRHKF 422 G ++ VG+R +F Sbjct: 383 G-----ISLGVGIRQRF 394 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 94/206 (45%), Gaps = 21/206 (10%) Query: 20 AQSSVTIYGIVDTGITYTSKAATGTGTNTGSKFAVNSGNIQGSRIGFKGVEDLGGGLSAV 79 A SS+++YG +D+GI + + G+ T K N G +R+G KG+E+LGGGL+ Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTT--KLGSN-GEYYNNRLGIKGMENLGGGLNMH 86 Query: 80 FNLETGFTNDNGGLQGSDAVTGSNLFRRKSVVGLSGGFGTVLLGRQTDFA-DTISAYTSV 138 F+LE+GF G L + LF R S +G++G FG++ GRQ A + AY Sbjct: 87 FHLESGFNTGTGELDNK----ANRLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPF 142 Query: 139 NDF------------GGLTGNVGHNLNRLEGTRTNNSISYTTANLNGFTGNLIYGFGETA 186 G L G V ++G R +N Y FT + Y GE Sbjct: 143 QYRYVHIIPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQY-FGKFGSFTASAEYIMGEVP 201 Query: 187 GKTSAGQSFGLGAKYDNGPLGLGANY 212 G + +G Y++G +G Y Sbjct: 202 GSNRNQAAKAVGLVYNDGTFTVGGAY 227 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 726,213 Number of extensions: 30605 Number of successful extensions: 116 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 4 Length of query: 422 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 338 Effective length of database: 723,567 Effective search space: 244565646 Effective search space used: 244565646 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)