BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4145.p
         (387 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096110|ref|YP_001101185.1| S-adenosylmethionine synthetase...   688   0.0  

>gi|134096110|ref|YP_001101185.1| S-adenosylmethionine synthetase
           [Herminiimonas arsenicoxydans]
          Length = 387

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/377 (89%), Positives = 365/377 (96%)

Query: 1   MSNQYLFTSESVSEGHPDKVADQISDAILDAIFTQDPYSRVAAETLCNTGLVVLAGEITT 60
           M+N +LFTSESVSEGHPDKVADQISDAILDAIF QDP +RVAAETLCNTGLVVLAGEITT
Sbjct: 1   MANDFLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITT 60

Query: 61  RANVDYIDVARETIKRIGYDNADFGIDYKSCAVLVAYDKQSPDIAQGVDEGRGVDLEQGA 120
            ANVDYI+VAR+TIKRIGYDNAD+GIDYKSC+VLVAYDKQSPDIAQGVDEG G+DL+QGA
Sbjct: 61  FANVDYIEVARDTIKRIGYDNADYGIDYKSCSVLVAYDKQSPDIAQGVDEGAGIDLDQGA 120

Query: 121 GDQGLMFGYACNETPELMPAAIYYAHRIVERQSQLRKDGRLPWLRPDAKSQVTLKYVDGK 180
           GDQGLMFGYAC+ETPELMPAAI+YAHRIVERQS+LRKDGRLPWLRPDAKSQVTL+YVDG+
Sbjct: 121 GDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR 180

Query: 181 PVAIDTVVLSTQHSPDIEQKDIHEAAIEEIIKPVLPAEWLKNTRYLINPTGRFVIGGPQG 240
           PV+IDT+VLSTQH+P+++ KDI EA IE IIKPV+PAEWLK+TR+L+NPTGRFVIGGPQG
Sbjct: 181 PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKDTRFLVNPTGRFVIGGPQG 240

Query: 241 DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERCQIQ 300
           DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAER QIQ
Sbjct: 241 DCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAERAQIQ 300

Query: 301 VSYAIGIAKPTSVMVTTFGTGKISDEKLAELVQEHFDLRPKGIVQMLDLLRPIYAKTAAY 360
           +SYAIG+AKPTSVMVTTFGTGKISDEK+A+LV EHFDLRPKGIVQMLDLLRPIY KTAAY
Sbjct: 301 ISYAIGVAKPTSVMVTTFGTGKISDEKIAQLVLEHFDLRPKGIVQMLDLLRPIYQKTAAY 360

Query: 361 GHFGREEPEFTWERTDK 377
           GHFGREEPEFTWERTDK
Sbjct: 361 GHFGREEPEFTWERTDK 377


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 800,230
Number of extensions: 35703
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 304
Effective length of database: 726,862
Effective search space: 220966048
Effective search space used: 220966048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)