BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4141.p
         (210 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096105|ref|YP_001101180.1| 5-formyltetrahydrofolate cyclo-...   169   1e-43

>gi|134096105|ref|YP_001101180.1| 5-formyltetrahydrofolate
           cyclo-ligase [Herminiimonas arsenicoxydans]
          Length = 186

 Score =  169 bits (427), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 112/178 (62%)

Query: 33  HHKTLLRKILLARRKAMQAEDQARAAALIGQRVLHWCAHQAIASLAVYQAIRGEPDLSAA 92
            +KT LRK LLA R A+  E +      + ++++ W   + + ++ VY  +RGEPDL+AA
Sbjct: 2   QNKTELRKTLLASRNAITDEQRQLWDKQLVEKIMAWWTIKRLHTIGVYWPMRGEPDLNAA 61

Query: 93  YNALAAQGVHLCLPVVVGQEAPLEFRAWQPGDVLEKDALGTLVPPAGAPIVQPQALLIPC 152
           Y  LA  GV L LPVVV   APL+F AW PGD + KD  G  VP      +QPQAL+IPC
Sbjct: 62  YATLAELGVQLALPVVVRDNAPLKFCAWTPGDPVIKDRYGAAVPADQHTELQPQALIIPC 121

Query: 153 LGFNAAGFRLGYGGGFYDRTLAVNPRPLAVGVCHGFGLVEFEAQTHDIALDDILTDAI 210
           +GFN   FRLGYGGGFYDRTLA  PRP  +GV +      F A  +DIALD ++T ++
Sbjct: 122 VGFNTQRFRLGYGGGFYDRTLASVPRPHTIGVAYAHAETVFSADPYDIALDMVMTPSM 179


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 356,133
Number of extensions: 14013
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 132
Effective length of database: 743,337
Effective search space: 98120484
Effective search space used: 98120484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)