BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4140.p
         (665 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096104|ref|YP_001101179.1| soluble lytic murein transglyco...   815   0.0  
gi|134094034|ref|YP_001099109.1| putative transglycosylase [Herm...    66   7e-12

>gi|134096104|ref|YP_001101179.1| soluble lytic murein
           transglycosylase [Herminiimonas arsenicoxydans]
          Length = 649

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/642 (63%), Positives = 487/642 (75%), Gaps = 3/642 (0%)

Query: 25  LALAGAAMLTMAPAAHAQKRLAPDAAPDDIFLALRQAAASDNAALAQDLASRLSGYELAS 84
           + L   + + + PAAHAQKR     + DD FLALR A+  ++AA A D+A+ L  Y + S
Sbjct: 10  ILLVAVSAVLLLPAAHAQKRPNGFVSDDDAFLALRDASRRNDAARASDIAANLGNYPIPS 69

Query: 85  YVDYYRLKPRVRDYSASEQEIRDFLARWEGQAIADRLRNDWLLALGKTGNWTVFDEQYPK 144
           YV+YY+LKPR++D SASE  +  FL R+ G AIADRLRNDWLL LGK  +W  FDEQYP+
Sbjct: 70  YVEYYQLKPRLKDASASE--VLAFLNRYSGSAIADRLRNDWLLELGKRRDWLTFDEQYPQ 127

Query: 145 FVLNDDTQVKCFALNSRALKGANVAEEARALLTNPKDYGQGCSDLIATLAQNGQFSDADV 204
           F LNDDTQ+KC+AL S+ALKG  VA+EARALL  PKD+G+GC  LI TL +  QF + D+
Sbjct: 128 FQLNDDTQLKCYALMSKALKGIKVADEARALLNVPKDFGEGCMALITTLMETKQFDENDL 187

Query: 205 WFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMERPALMLAKGPGRGAANHQLYIIALG 264
           W QIR A++ G+    RR   L    D S+   ME+PA ++A+G G     H++Y+IALG
Sbjct: 188 WAQIRLASDTGSTDYVRRFVPLTGIEDGSLVAAMEKPASIVARGVGFRRVRHEVYVIALG 247

Query: 265 RIAKSNPTQAATYLSE-ARTLTAQEAALGWAQIALAASYKLAPEASDYWRRAKEAPLSQD 323
           RIA+SNP QAA  LS     L+ ++    W QIA  AS KLAPEA  YWR+A  APLS +
Sbjct: 248 RIARSNPAQAADTLSNNTLLLSKKQEGFAWGQIAYQASMKLAPEAMQYWRKAGNAPLSLE 307

Query: 324 AMQWKVRMALRDGDWKTVRKTIEAMPAPLRSDTTWVYWLGRALKEDGQTEAARRLFESIA 383
           A QWK+R ALR GDWK V   IEAMP  LRSD TWVYWL RAL+E+G+ EAA   F+SIA
Sbjct: 308 AHQWKIRAALRAGDWKLVSAGIEAMPPSLRSDATWVYWLARALREEGKIEAAHAGFQSIA 367

Query: 384 PNFSFYGQLALEELGQKISIPPGPTPPGAGEVALYSQNAGFRRSLKFYQLNLRFEAIREW 443
           P  SFYGQLALEELGQKI+IP    P    E+A  + NAGFRR+LKF+ L+LRFE  REW
Sbjct: 368 PQTSFYGQLALEELGQKITIPARALPVTEEEIAPMTSNAGFRRALKFFDLDLRFEGYREW 427

Query: 444 NWELRNMNDRQLLAAAEYARQNDVLDRMVNTSDRTKSEFDFTQRFPAPHLPEMNAATRPL 503
           NWELR MNDRQLLAAAE+AR++DVLDRMVNTSDRTK+EFDFTQRFP PH   M A T+  
Sbjct: 428 NWELRKMNDRQLLAAAEFARRSDVLDRMVNTSDRTKTEFDFTQRFPTPHRDIMQATTQRQ 487

Query: 504 GMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVAKKIGMSEFTVDQVNDINT 563
           GME AWVYGLIRQESRFI +ARSHVGASGLMQLMPATA+ VAKKIG+S+F+  +VN+I T
Sbjct: 488 GMEMAWVYGLIRQESRFIMNARSHVGASGLMQLMPATARHVAKKIGLSDFSPGRVNEIET 547

Query: 564 NLLLGTSYLDMVLNNLDGSETLATAGYNAGPGRPRTWRASLPRPVEGAIFAEIIPFNETR 623
           N+LLGTSYL+MVLN+L+GS+TLATA YNAGPGRPR+WR++L RPVEGAIFAE IPF+ETR
Sbjct: 548 NILLGTSYLNMVLNDLEGSQTLATAAYNAGPGRPRSWRSTLARPVEGAIFAESIPFSETR 607

Query: 624 GYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSNVATDLP 665
            YVK V+SNATYYAAMFE +PQSLK R+G VAP S V TDLP
Sbjct: 608 DYVKKVLSNATYYAAMFEGKPQSLKARLGNVAPASFVPTDLP 649


>gi|134094034|ref|YP_001099109.1| putative transglycosylase
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 12/134 (8%)

Query: 496 MNAATRPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVAKKIGMSEFTV 555
           +N A     ++ A +  ++  ES F  +A S  GA GLMQLMPATA+    +    +   
Sbjct: 93  LNDAANEFNLDPALLKAVMAAESGFNPNAVSPKGAVGLMQLMPATAERFGLQADRKKTVA 152

Query: 556 DQVNDINTNLLLGTSYLDMVLNNLDGSETLATAGYNAGPGRPRTWRASLPRPVEGAIFAE 615
            ++ D  TN+ LG  YL ++ +     + L  A YNAG G  + +  ++P          
Sbjct: 153 QKLTDPKTNIRLGARYLRVLRDMYPNQQHLVLASYNAGEGAIQKYNNTIP---------- 202

Query: 616 IIPFNETRGYVKNV 629
             PF ETR YVK V
Sbjct: 203 --PFPETRNYVKLV 214


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,156,921
Number of extensions: 45380
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 665
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 577
Effective length of database: 710,387
Effective search space: 409893299
Effective search space used: 409893299
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)