BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4138.p
         (233 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096103|ref|YP_001101178.1| glutathione S-transferase [Herm...   322   1e-89

>gi|134096103|ref|YP_001101178.1| glutathione S-transferase
           [Herminiimonas arsenicoxydans]
          Length = 237

 Score =  322 bits (824), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/232 (65%), Positives = 185/232 (79%)

Query: 1   MQDTELDQVLSETLQKAGRHMPTLVIANKNYSSWSMRPWVVMVAFDLPFKEVRVLLDQPE 60
           MQ TELD  LS+TL   G++   LVIANKNYSSWSMRPWV M AF++PF+EV +LLD+ +
Sbjct: 1   MQTTELDPALSQTLDSTGKNGLKLVIANKNYSSWSMRPWVAMTAFNIPFQEVSLLLDRAD 60

Query: 61  TAGEIARYTGSGRVPVLLDGDIAIWDSLSICEYLAEQFPDRALWPVRTDARAIARSICAE 120
           TA +IA Y+ +GRVP+LL G+  IWDSL+ICEYLAEQFP++ +WP    ARA+ARSICAE
Sbjct: 61  TAMQIAHYSSAGRVPILLAGETTIWDSLAICEYLAEQFPEKKMWPEDVAARALARSICAE 120

Query: 121 MHSGFTGLRSAMSMDIRGRYPGQGRTADAQADIARVCEIWEECLSQFGHHDFLFGDFSIA 180
           MHSGFTG+RSAM M+IR R+PG+GRT DAQADI R+ EIWE CL+  G  +FLFG+FSIA
Sbjct: 121 MHSGFTGVRSAMWMNIRARFPGKGRTIDAQADIGRISEIWETCLALSGPSEFLFGEFSIA 180

Query: 181 DAFYAPVVMRFVSYQVPLAPALQAYAERVRQHPAVARWIAEALAEKEILPGH 232
           DA++APVVMRF +Y V L PAL AY ERV  HPAVA+WI+ ALAE   +P +
Sbjct: 181 DAYFAPVVMRFRTYDVVLGPALDAYVERVAAHPAVAQWISGALAETARIPKY 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 478,147
Number of extensions: 18974
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 154
Effective length of database: 740,042
Effective search space: 113966468
Effective search space used: 113966468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)