BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4133.p
         (277 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093471|ref|YP_001098546.1| protein methyltransferase HemK ...   325   1e-90
gi|134094545|ref|YP_001099620.1| N5-glutamine S-adenosyl-L-methi...    82   3e-17

>gi|134093471|ref|YP_001098546.1| protein methyltransferase HemK
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  325 bits (834), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/268 (66%), Positives = 212/268 (79%), Gaps = 1/268 (0%)

Query: 8   AGCTLATVLKTAPLEPLENRILLCHALRLTRVQLITQSERRLDAAESERLTALYARRLRG 67
           AG T+A +L+ AP+E LE R+L+ H  +L+RVQLIT +ER L+AAE+++L  L+ARR+ G
Sbjct: 6   AGDTIAAILRRAPVEQLEARMLIGHVTQLSRVQLITNAERVLNAAEAQQLATLFARRMAG 65

Query: 68  EPIAYIVGWREFYGLDLRVTPDVLIPRPDTELLVELAMERLPQAGSLLDMGTGSGAIAIA 127
           EP+AY++G REFYGL  +V+P VLIPRPDTELLVELA++RLPQ G +LDMGTGSGAIAIA
Sbjct: 66  EPMAYLLGEREFYGLSFQVSPAVLIPRPDTELLVELALQRLPQQGRVLDMGTGSGAIAIA 125

Query: 128 IAHTRADAAVTALDASAAALAIARENASTHQVRVRLLESDWYGALASEEQFDVIASNPPY 187
           IAH R DA VTALD S AALA+A  NA  H+ RV  L SDW+ AL    QFD+I SNPPY
Sbjct: 126 IAHARPDAVVTALDVSEAALAVASANAHRHKARVECLRSDWFAALDG-RQFDLIVSNPPY 184

Query: 188 IVAGDLHLSQGDLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEHGYDQATAV 247
           IVAGD HLS+GDLRFEP+DAL+DHADGL  LR I + A  HL   GWLLMEHGYDQA AV
Sbjct: 185 IVAGDRHLSEGDLRFEPIDALSDHADGLSALRIISEHAADHLSDDGWLLMEHGYDQAAAV 244

Query: 248 RALLAGTGFTDVQSWRDLAGIERVSGAR 275
           R LLA  GF +VQSWRDLA IERVSG +
Sbjct: 245 RGLLAENGFGEVQSWRDLAQIERVSGGK 272


>gi|134094545|ref|YP_001099620.1| N5-glutamine
           S-adenosyl-L-methionine-dependent methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 296

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 13/191 (6%)

Query: 69  PIAYIVGWREFYGLDLRVTPDVLIPRPDTELLVELAMERLP-------QAGSLLDMGTGS 121
           P AYI       G    V   V++PR     + EL  ++         +  ++L++ TGS
Sbjct: 84  PAAYITNEGWLGGYHFYVDERVIVPR---SFIAELIPDQFSPWVSNPDKITNILELCTGS 140

Query: 122 GAIAIAIAHTRADAAVTALDASAAALAIARENASTHQV--RVRLLESDWYGALASEEQFD 179
           G + I +A    +A V A+D SA ALA+AR N   +++  R+ L+ESD Y  +  E ++D
Sbjct: 141 GCLPIMLADAFPNAQVDAVDISADALAVARRNVDEYELQDRITLIESDLYTHV-PENKYD 199

Query: 180 VIASNPPYIVAGDLHLSQGDLRFEPLDALTDHADGLCDLRTIIDGAPAHLKAGGWLLMEH 239
           +I +NPPY+ +  +     +   EP  AL    DG+  +R I+ GA   L   G L++E 
Sbjct: 200 LIITNPPYVNSTSMGKLPPEYLREPHIALAGGDDGMDLVRKIVAGAGKRLTPNGLLMVEI 259

Query: 240 GYDQATAVRAL 250
           G ++A A  A 
Sbjct: 260 GNERAYAEAAF 270


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 502,134
Number of extensions: 19729
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 197
Effective length of database: 736,747
Effective search space: 145139159
Effective search space used: 145139159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)