BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4131.p
         (359 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 ...   646   0.0  
gi|134095412|ref|YP_001100487.1| peptide chain release factor 2 ...   222   2e-59

>gi|134093473|ref|YP_001098548.1| peptide chain release factor 1
           [Herminiimonas arsenicoxydans]
          Length = 356

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/354 (87%), Positives = 331/354 (93%)

Query: 5   MLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQANEDIRT 64
           MLAKLDQL ERL ELN LL QEDAT++MDN+RKMTREHAELGPLVALY +Y QA+ DI+ 
Sbjct: 1   MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 60

Query: 65  AQELLSDPDMKLFAQEEIDAAKARMQALELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 124
           AQ +LSDPDMK FAQEE+ AAK RM+ LELDLQKMLLPKDPNDERNIFLEIRAGTGGDES
Sbjct: 61  AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 120

Query: 125 ALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGFGAYSRLKFESGGHRV 184
           ALFAGDLLRMYTR+AER RWQ+E+VS S SE+GGYKEVI RIVG GAYS+LKFESGGHRV
Sbjct: 121 ALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRV 180

Query: 185 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 244
           QRVPATETQGRIHTSACTVAVMPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV
Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 240

Query: 245 RITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATRKSLIGSGDRS 304
           RITH+PTGIVVECQDDRSQHKNKA A+KVLAARIKDVQLR+QQS+EAATRKSLIGSGDRS
Sbjct: 241 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRS 300

Query: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGD 358
           ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL  EHQA+LLA LGD
Sbjct: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAALGD 354


>gi|134095412|ref|YP_001100487.1| peptide chain release factor 2
           [Herminiimonas arsenicoxydans]
          Length = 325

 Score =  222 bits (566), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 25/309 (8%)

Query: 48  LVALYHDYVQANEDIRTAQELLSDPDMKLFAQEEIDAAKARMQALELDLQKML------- 100
           L A+ H  ++ + +++ A +L         A+EE D  +  + A+E D Q++L       
Sbjct: 23  LEAIVHTLIKVDAELKDAHDLFE------MAREEND--EDTIVAIEADTQELLKTVEGME 74

Query: 101 ---LPKDPNDERNIFLEIRAGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESELG 157
              +   P D  N F++I+AG GG E+  +A  LLR Y RY ER+ ++VEI+  S+ E+ 
Sbjct: 75  FRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRYCERKGFKVEILEQSDGEVA 134

Query: 158 GYKEVIARIVGFGAYSRLKFESGGHR-VQRVPATETQGRIHTSACTVAVMPEADEVEDVD 216
           G K    ++ G  AY  L+ E+G HR V++ P     GR HTS  ++ V PE D+  ++D
Sbjct: 135 GIKTATLKVEGEYAYGLLRTETGVHRLVRKSPFDSANGR-HTSFSSLFVYPEVDDSIEID 193

Query: 217 INPADIRIDTYRASGAGGQHINKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAA 276
           INPAD+RIDTYRASGAGGQHINKTDSAVR+TH P+GIVV+CQ+DRSQH+NKA+A  +L A
Sbjct: 194 INPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQHRNKAEAWDMLKA 253

Query: 277 RIKDVQLRQQQSKEAATR--KSLIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMD 334
           ++ ++++R + S++      K+ +G G    +IR+Y   Q R+ D R N        ++D
Sbjct: 254 KLFELEMRNRMSEQQKLEDSKTDVGWG---HQIRSYVLDQSRIKDLRTNFETGNTKAVLD 310

Query: 335 GDLDELTNA 343
           GDLD+   A
Sbjct: 311 GDLDDFIAA 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 650,020
Number of extensions: 25880
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 276
Effective length of database: 726,862
Effective search space: 200613912
Effective search space used: 200613912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)