BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4130.p
         (430 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093474|ref|YP_001098549.1| glutamyl-tRNA reductase [Hermin...   730   0.0  

>gi|134093474|ref|YP_001098549.1| glutamyl-tRNA reductase
           [Herminiimonas arsenicoxydans]
          Length = 429

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/430 (80%), Positives = 398/430 (92%), Gaps = 1/430 (0%)

Query: 1   MHLLAVGLNHTTAPLSLREKVAFPADQIGQAVASARAWFGGNDKIVAAGEAAILSTCNRT 60
           M LLAVGLNHTTAP+SLREKVAFPADQ+GQAVASAR W+G +D    + EAAILSTCNRT
Sbjct: 1   MQLLAVGLNHTTAPVSLREKVAFPADQLGQAVASARVWYGRSDSKTYSDEAAILSTCNRT 60

Query: 61  ELYAAAAAGRDGVEFAIDRTAQFLAEYHQIAYADLRPYLYSLPQDNAVRHAFRVASGLDS 120
           ELYAA+     GV  AID TA FLA+YH++ Y++LRPYLY+LPQDNAVRHAFRVASGLDS
Sbjct: 61  ELYAASHQP-GGVNEAIDLTAHFLADYHKLPYSELRPYLYALPQDNAVRHAFRVASGLDS 119

Query: 121 MVLGEPQILGQMKDAVRQADAAGGLGTYLHQLFQRTFAVAKEVRTTTEIGAHSVSMAAAA 180
           MVLGEPQILGQMKDAVRQA+AAGGLGTYLHQ+FQRTFAVAKEVR+ TEIGAHSVSMAAA+
Sbjct: 120 MVLGEPQILGQMKDAVRQAEAAGGLGTYLHQMFQRTFAVAKEVRSNTEIGAHSVSMAAAS 179

Query: 181 VRLSQRIFDSITGQNVLFIGAGEMIELCATHFAAQNPKTLTVANRTMERGETLAHRFSGR 240
           VRLSQRIFD+I+ QNVLFIGAGEMIELCATHFAAQNPK+LT+ANRT+ERGETLAHRF+GR
Sbjct: 180 VRLSQRIFDTISEQNVLFIGAGEMIELCATHFAAQNPKSLTIANRTLERGETLAHRFNGR 239

Query: 241 AIRLADLPAQLANFDIVVSCTASQLPIIGLGLVERAVKARRHKPIFMVDLAVPRDIEAEV 300
           AIRLADLP QLA++DIV+S TAS LPIIGLG+VERA+KARRHKP+FMVDLAVPRDIE E+
Sbjct: 240 AIRLADLPDQLASYDIVISSTASSLPIIGLGMVERAIKARRHKPMFMVDLAVPRDIETEI 299

Query: 301 GRLDDVFLYTVDDLASVVQSGVENRQAAVAQAEAIIETRVQSFMHWIDSRAMVPLIQDLQ 360
           GRLDDVFLYTVDDL + VQ+G+ENRQAAV QAEAIIETRVQSFMHWID+RA+VP+IQDL 
Sbjct: 300 GRLDDVFLYTVDDLGTFVQTGLENRQAAVTQAEAIIETRVQSFMHWIDARAVVPVIQDLH 359

Query: 361 ETGEALRLAELDRARRMLAKGDDVEAVLEALSKGLTAKFLHGPQQALHHAQGEQRSQLAA 420
           E+ E +R+ EL+RAR++LAKG+D++AVLEALSKGLTAKFLHGPQQAL++AQG++R++LAA
Sbjct: 360 ESSEMMRMIELERARKLLAKGEDIDAVLEALSKGLTAKFLHGPQQALNNAQGDERTRLAA 419

Query: 421 LLPQLFRAKR 430
           LLPQLFR KR
Sbjct: 420 LLPQLFRTKR 429


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 717,784
Number of extensions: 27267
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 346
Effective length of database: 723,567
Effective search space: 250354182
Effective search space used: 250354182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)