BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4129.p (233 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093477|ref|YP_001098552.1| two-component system response r... 136 1e-33 gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 66 1e-12 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 60 1e-10 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 57 6e-10 gi|134093799|ref|YP_001098874.1| response regulator in two-compo... 57 9e-10 >gi|134093477|ref|YP_001098552.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 29/244 (11%) Query: 1 MKIGIISSDADTVTLVTQLAERHDTTVYTGAEGFAAACDDGAHLMVLDLDDLQRHPHAIT 60 M+I ++ D LV Q V + A F G L L+ L+R + Sbjct: 1 MRIAVLDDDRSQTDLVCQ--------VLSAAGHFCHPFQSGKEL----LNQLRRE--SFD 46 Query: 61 TIVHDHRPP----------VRSKVRPL--VLLICTPAHQHWLRNLRLAGADDFLVKPVRR 108 ++ D + P R K+ P VL + + + + + AGADD+++KP+RR Sbjct: 47 MLIIDWQVPDLSGADVLLWAREKLSPNLPVLFMTSRSGEDDIVAGLAAGADDYMIKPIRR 106 Query: 109 QELALRLDLLLLAAQPYEAPPNIVEAAGFVVDLARLRVTHPARPDLDATLTRKEAELALL 168 EL R+ LL A P + P ++ F+ + R+T P +T+KE +LALL Sbjct: 107 GELLARVQALLRRAYPSQNPIEQIQFGNFIFEARTGRLTMSGTP---IEVTQKEFDLALL 163 Query: 169 FMQHLGRPLSRAFLLERIWGNEQETPTRTIDTHVSRIRTKLGLQPSNGYQLATVYGYGYQ 228 F ++LGRPLSRA++LE +W + E P+RT+DTHVSR+R+KL L+P +G++LA VY YGY+ Sbjct: 164 FFRNLGRPLSRAYILEAVWARDVEIPSRTMDTHVSRVRSKLQLRPEHGFRLAPVYSYGYR 223 Query: 229 LEKL 232 LE++ Sbjct: 224 LEQM 227 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 66.2 bits (160), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 10/158 (6%) Query: 76 PLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLLAAQPYEAP------P 129 P+++L + L + GADD++ KP +EL R+ +L P EAP P Sbjct: 93 PIIMLTAKGEDVDRIVGLEM-GADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETP 151 Query: 130 NIVEAAGFVVDLARLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGN 189 F +DL + + D LT E + +F +H +PLSR L+E G Sbjct: 152 QSFTFGEFTLDLGTRTL---KKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGR 208 Query: 190 EQETPTRTIDTHVSRIRTKLGLQPSNGYQLATVYGYGY 227 E E R++D +SR+R + PS + TV+G GY Sbjct: 209 EYEVFDRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGY 246 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 13/138 (9%) Query: 97 GADDFLVKPVRRQELALRLDLLLLAAQPYEAP-PNIVEAAGFVVDLARLRVTHPARPDLD 155 GADD++VKP EL R+ LL P +P + ++ + V+DLAR T + Sbjct: 94 GADDYVVKPFAFSELLARVRTLLRRGIP--SPLVDRMQVSDLVLDLARRAATRAGKR--- 148 Query: 156 ATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETPTRTIDTHVSRIRTKLGLQPSN 215 TLT KE L ++H G L R+ + +IW + T ID + R+R+K+ + Sbjct: 149 LTLTNKEFLLLEFLVRHKGEVLPRSLIASQIWDINFNSDTNVIDVAIRRLRSKM----DD 204 Query: 216 GYQ---LATVYGYGYQLE 230 Y+ ++T+ G GY LE Sbjct: 205 DYEPKLISTIRGVGYVLE 222 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 57.4 bits (137), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 8/156 (5%) Query: 76 PLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLLAAQPYEAPPNIVEAA 135 P+++L + + L GADD++ KP +EL R++ LL P E ++ A Sbjct: 81 PIIMLTAKSMEEDKIAGLD-NGADDYVTKPFSPRELTARINALLRRKTP-EHAQTLMTAG 138 Query: 136 GFVVDLARLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNEQETPT 195 +D V+ D + E +L F+ H R SR+ LL+++WG+ Sbjct: 139 SISLDPISCSVSMN---DEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVWGDHVVIEE 195 Query: 196 RTIDTHVSRIRTKLGLQPSNGYQLATVYGYGYQLEK 231 RT+D HV R+R L + + TV GY L + Sbjct: 196 RTVDVHVLRLRKAL---KEAEHLIKTVRSVGYMLSE 228 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 57.0 bits (136), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 8/160 (5%) Query: 72 SKVRPLVLLICTPAHQHWLRNLRLAGADDFLVKPVRRQELALRLDLLLL-AAQPYEAPPN 130 K P++ L ++ L L GADD+L+KP EL R+ LL + P ++ Sbjct: 50 GKQMPVLFLTARGGVDDRVKGLEL-GADDYLIKPFAFSELLARVRTLLRRGSAPSQSER- 107 Query: 131 IVEAAGFVVDLARLRVTHPARPDLDATLTRKEAELALLFMQHLGRPLSRAFLLERIWGNE 190 +E A ++DL R + T + LT KE L L + G L R+ + ++W Sbjct: 108 -LEVADLILDLPRRKATRMGQK---IVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMN 163 Query: 191 QETPTRTIDTHVSRIRTKLGLQPSNGYQLATVYGYGYQLE 230 ++ + ID + R+R K+ P + TV G GY L+ Sbjct: 164 FDSDSNAIDVAIRRLRAKID-DPFEPKLIHTVRGMGYTLD 202 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 436,341 Number of extensions: 15857 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 8 Length of query: 233 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 154 Effective length of database: 740,042 Effective search space: 113966468 Effective search space used: 113966468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)