BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4122.p (516 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 128 8e-31 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 125 5e-30 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 122 5e-29 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 118 8e-28 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 112 3e-26 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 128 bits (321), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 LEI ++ + + D++SL++ GE +LG +G GK+TL+++I G +PDAG+I + Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLD-AKTDLKELAERITRTGEK 126 G + P+ + + VFQ+++LF +TV NIA L+ A T E+ +++ E Sbjct: 64 GVDLTGVPPE---QRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALED 120 Query: 127 YGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTLRRLA 186 L R+ H LS G+RQRV I RAL+T P+LL+LDEP S L Q E++ + L L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 187 DE-GCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMM 235 E G + +Y++H E AL H VM G + +P S SR + Sbjct: 181 KEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFV 230 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 125 bits (314), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 133/238 (55%), Gaps = 9/238 (3%) Query: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 + +E+ ++ K + +A +DVSL GE+ A+LG +G GK+TL++II G +PD G++ Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 66 WNGAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGL---DAKTDLKE--LAERI 120 +G + A+ + R+ + VFQH++LF +TV ENIA GL A T E + E++ Sbjct: 61 LDG---EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKV 117 Query: 121 TRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFV 180 T+ E L+ R+ LS G+RQR+ + RAL EP++L+LDEP L + ++L Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 181 TLRRLADE-GCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIG 237 LRRL DE + ++++H +E + +M G V P++ + S + G Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYG 235 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 122 bits (305), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/211 (35%), Positives = 113/211 (53%), Gaps = 1/211 (0%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 L + + Y V DVS+ VAPG+I +LG NGAGKSTL++ I G P GEI WN Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKTDLKELAERITRTGEKY 127 G + GI+ + + +F ++V EN+ALG T+ + ER+ R E + Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 128 G-LELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTLRRLA 186 L+ + T+S GE+ V I R L+ EPQLL++DEP+ L+P V++ F +RR+ Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 187 DEGCSILYISHKLDEIRALCHSATVMRGGRV 217 G ++L + + A+ H V+ GRV Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRV 214 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 118 bits (295), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 16/226 (7%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 L+ + A+ G++AND VS + G +H+V+G NGAGKST + + G +P +G I + Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKT---------------- 111 G ++G+A FQ+ LF +T EN+ +G D++ Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 112 DLKELAERITRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLT 171 D + A E GL+ + L G ++R+EI RAL P+LL+LDEP + LT Sbjct: 468 DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLT 527 Query: 172 PQAVEKLFVTLRRLADEGCSILYISHKLDEIRALCHSATVMRGGRV 217 +E L +R LA ++L + H +D I A+ TV+ G+V Sbjct: 528 HGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKV 573 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 20/227 (8%) Query: 8 LEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIRWN 67 L I++V K + G+ A DV++ + G+I+ ++G NGAGK+T +I G + D+G Sbjct: 11 LNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFELA 70 Query: 68 GAAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKT---------------- 111 G A + P + K GIA FQ+ LF +T EN+ +G +T Sbjct: 71 GKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAARQ 130 Query: 112 DLKELAERITRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLT 171 + + R + G+ R LS G+++R+EI RAL T+PQLL LDEP + + Sbjct: 131 EEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 190 Query: 172 PQAVEKLFV--TLRRLADEGCSILYISHKLDEIRALCHSATVMRGGR 216 A EKL + L ++ EG +IL I H + + LC TV+ G+ Sbjct: 191 --ATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGK 235 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 996,432 Number of extensions: 42407 Number of successful extensions: 361 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 277 Number of HSP's successfully gapped: 59 Length of query: 516 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 430 Effective length of database: 716,977 Effective search space: 308300110 Effective search space used: 308300110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)