BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4120.p (261 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 159 1e-40 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 155 1e-39 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 144 6e-36 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 143 1e-35 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 141 4e-35 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 124/223 (55%), Gaps = 10/223 (4%) Query: 5 FVDFRHVYLAYDGATEF--AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRG 62 F+D +H +++ A+ DI+L GEFI ++G SGCGKST + L GL Q+ G Sbjct: 8 FIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGG 67 Query: 63 SVVINGQPVTGPLKFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFK--QKKAQYTE 120 ++ + + GP + FQ +LLPW T ENV L +E R F + KA+ Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVE------RVFGKVEGKAKLRA 121 Query: 121 RALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREEL 180 R A L VGL K P ++SGGM+QR I RAL EPK+LL+DEPFGALDA TR L Sbjct: 122 RTRAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHL 181 Query: 181 WCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIV 223 L + A V++VTHD+ EA L+D I +++ P + Sbjct: 182 QDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATI 224 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 155 bits (393), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 13/239 (5%) Query: 16 DGATEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPL 75 DG +E+++ GE +A++G SG GKST +++ GL A++G+ GQ + P+ Sbjct: 20 DGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQGTAKYRGQEIYSPV 79 Query: 76 KFVGMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYA 135 + M FQ+ L PW T +NV L LE + D ++K+A A+L +GL G+ Sbjct: 80 SGIAMVFQSFALFPWLTVQQNVELGLE-AQGMAPDEREKRAD------AMLDLIGLAGFG 132 Query: 136 DKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRF-- 193 P +LSGGM+QR I R L+ P +LL+DE F ALD T E L + ++W E+R Sbjct: 133 GALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEKRIPT 192 Query: 194 -NVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRPCDLETTYTDGFNALVHEL 251 +++V+H++ EA +AD I V+S PGRI + LPRP ++++ AL+ E+ Sbjct: 193 KGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVE---IRALIDEV 248 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 144 bits (362), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 117/199 (58%), Gaps = 6/199 (3%) Query: 22 AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTGPL---KFV 78 A+ D+ L+ AGE A++GPSGCGK+T +++ GL+Q + G V+++G+ + + V Sbjct: 17 ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRERQV 76 Query: 79 GMAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYADKF 138 G FQ L T EN+ L + R ++ E+ LL+ V LD AD++ Sbjct: 77 GFVFQHYALFKHMTVFENIAFGLRVRPAATR---PSESVIKEKVTKLLELVQLDWLADRY 133 Query: 139 PWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILV 198 P QLSGG +QR ++ RAL EP++LLLDEPFGALDA R+EL LR L E I V Sbjct: 134 PPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFV 193 Query: 199 THDLREAAFLADTIYVMSK 217 THD EA +AD I +M+K Sbjct: 194 THDQEEALEVADQIVLMNK 212 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 143 bits (360), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/261 (32%), Positives = 133/261 (50%), Gaps = 19/261 (7%) Query: 1 MSEPFVDFRHVYLAYDGATEF--AVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQ 58 + +P +D R V L Y A +D + + ++GPSGCGKST +K G Sbjct: 4 LPQPLLDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMM 63 Query: 59 ANRGSVVINGQPVTGPLKFVGMAFQA-PTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQ 117 G + ++ + +T P M FQ L PW+T +NV+ PL K K + Sbjct: 64 PTEGEMRLHDKVITKPWYDRMMVFQEFDQLPPWKTVKQNVMFPL------LASGKLKGKE 117 Query: 118 YTERALALLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTR 177 ++A+ ++ V L +AD +P LSGGM+QR +I R + EP +LL+DEP+ ALDA TR Sbjct: 118 AEDKAMYYIEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTR 177 Query: 178 EELWCVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVKRDNPLPRPCDLE 237 +++ L LW + F V+ VTH + EA + + I ++S PG++ +L Sbjct: 178 KKMQDELLQLWDDTHFTVLFVTHSIAEAVKIGNRILLLSPHPGQVT----------AELN 227 Query: 238 TTYTDGFNALVHELREHIGQV 258 +T D +A + L E I ++ Sbjct: 228 STGEDTIDADGNCLTEKINKM 248 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 141 bits (355), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/198 (39%), Positives = 113/198 (57%), Gaps = 10/198 (5%) Query: 23 VEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQANRGSVVINGQPVTG---PLKFVG 79 V++I L AGEF ++GPSGCGK+T +++ G + + G ++++G +TG + V Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRVVR 78 Query: 80 MAFQAPTLLPWRTTLENVLLPLEIVEPYRRDFKQKKAQYTERALALLKTVGLDGYADKFP 139 FQ L P T N+ PLE+ + + KQK + L+ V L G+A ++P Sbjct: 79 TVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEA-------LEDVRLTGFAARYP 131 Query: 140 WQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELWCVLRDLWAERRFNVILVT 199 +LSGG +QR SI RAL+ PK+LLLDEP ALDA RE++ L +L E + VT Sbjct: 132 HELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYVT 191 Query: 200 HDLREAAFLADTIYVMSK 217 HD EA L+ I VM+K Sbjct: 192 HDQAEALALSHRIAVMNK 209 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 508,022 Number of extensions: 20685 Number of successful extensions: 191 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 45 Length of query: 261 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 181 Effective length of database: 736,747 Effective search space: 133351207 Effective search space used: 133351207 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)