BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4113.p
         (246 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg...    67   1e-12
gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg...    56   2e-09

>gi|134095895|ref|YP_001100970.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 13/209 (6%)

Query: 34  QDIYDAIMEHR--------LPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEAN 85
           Q ++DA++EH         L P  KL E+ +C+    +R  +R+ +  LASEG++D+  N
Sbjct: 22  QRLHDAVVEHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIAPN 81

Query: 86  RGAFIASPSHAEVRDMFELRNILEHAVLEKVGRQAGTRQIAGLRRMVEEERDCYLNGDRP 145
           RGAF++  +  E+ + FE+ + LE    E    +    +IA ++ + E    C    D P
Sbjct: 82  RGAFVSKMNDNEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHEAMLVCRAQNDLP 141

Query: 146 RWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKT---EAPGHNACSFDEHETVL 202
            +   +   H  + E   N++L +    +  R   +  K+   EA    A    EH+ ++
Sbjct: 142 GYYSRNQTIHNKINEAARNSMLRQIYLSINRRLLALRFKSNFQEAKWDRA--IHEHDEMI 199

Query: 203 EALEKGDIEAAQEHMAHHLHLCEDRVRPD 231
           +ALE  D +     +  HL    D V  D
Sbjct: 200 KALESRDGKRLAAILRQHLLDKRDSVMAD 228


>gi|134094688|ref|YP_001099763.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 30  ERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLSRLASEGMVDLEANRGAF 89
           E + + I + I   +LPP   L E  L + +  +R  +R+ L +LAS G++ +   RGA 
Sbjct: 6   EVLREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAI 65

Query: 90  IASPSHAEVRDMFELRNILEHAVLEKVGRQ---AGTRQIAGLRRMVEEERDCYLNGDRPR 146
           +A     ++ +MFE+   LE        R+   AG   +       EE RD   + D   
Sbjct: 66  VAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAGHATLKATHLACEEARD---SADSDA 122

Query: 147 WIRLSAQFHLALAELTGNALLVETLRKLVSRT-TLMIAKTEAPGHNACSFDEHETVLEAL 205
           +   + +FH  +   + N+ L E  R L  R       +         SFDEH  V++A+
Sbjct: 123 YFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQASFDEHGAVVDAI 182

Query: 206 EKGDIEAAQEHMAHHLHLCEDR 227
            +G  E A E +  H+ +   R
Sbjct: 183 IEGKGELAAELLRQHIMIQGQR 204


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 406,389
Number of extensions: 14535
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 3
Length of query: 246
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 167
Effective length of database: 740,042
Effective search space: 123587014
Effective search space used: 123587014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)