BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4110.p
         (273 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094932|ref|YP_001100007.1| AraC family transcriptional reg...    55   3e-09

>gi|134094932|ref|YP_001100007.1| AraC family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 366

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 154 ITRAKSWINEQPAHAWTLAELAREADLSRFQFIRHFDRATGLTPHAYIVQRRIHLARQMI 213
           I +A  W  E  A    +   A    +S   F R F R TG TPH +++  R+   RQ +
Sbjct: 234 IQQASRWFAEHMAEPINILSAANFVSMSERNFQRQFKRETGWTPHEFLLHLRLEAVRQQL 293

Query: 214 RQ-GCSLRDVAASCGFADQSHMTRQFVRSFGLSPGAYARAVSGARQSLQFPS 264
            +    +  +A  CGF    H+++ F +   +SP  Y R     ++ L FP+
Sbjct: 294 TETDLPVDKIARRCGFLSGEHVSKLFRKHLSVSPCEYRRNERSVQKQL-FPA 344


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 519,850
Number of extensions: 19823
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 193
Effective length of database: 736,747
Effective search space: 142192171
Effective search space used: 142192171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)