BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4109.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093846|ref|YP_001098921.1| putative homoserine/homoserine ...    54   7e-09

>gi|134093846|ref|YP_001098921.1| putative homoserine/homoserine
           lactone efflux protein [Herminiimonas arsenicoxydans]
          Length = 259

 Score = 53.5 bits (127), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 8/136 (5%)

Query: 5   FLITSLIVVASPGTGALVTLNAGLSHGTRAAMVAATGCTLGIIPHMLLAITGLATVLHSS 64
           FL+ ++++  SPG+GA+++++ GLS+G +       G   G+I  +L+A  G+ ++L +S
Sbjct: 53  FLVAAVVIAVSPGSGAVLSMSHGLSYGVKKTTGTIIGLQAGLILLLLIAGAGVGSLLLAS 112

Query: 65  PFCFELIQYAGVLYLLRMAWLVMKEKNLLSVERVQRP---QTYYEIIQNAVLVNFL---- 117
              F +++  G LYL+ + W   + K  +  + V+ P    T+    +   L+ F     
Sbjct: 113 EVAFNIVKTVGALYLIYLGWNQWRAKVTIPPD-VRAPVATPTHVPSWRKRFLLGFFTNAT 171

Query: 118 NPKLSIFFLAFLPQFI 133
           NPK  IF +A LPQFI
Sbjct: 172 NPKGVIFMVAVLPQFI 187


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 355,373
Number of extensions: 12869
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 126 (53.1 bits)